Contig 006618:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-                                CGAGCTGCTATCGGAAACACAGCGAGGAAAATTGAGTG
                      ____________________________________________________________
consensus                                   CGAGCTGCTATCGGAAACACAGCGAGGAAAATTGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          AATTACATGAAACGCAATAATAATTGCAACTCTCTTTATATGACAATCATTGGCTGCAGG
                      ____________________________________________________________
consensus             AATTACATGAAACGCAATAATAATTGCAACTCTCTTTATATGACAATCATTGGCTGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          CTGCACAAGATCAATTCTAAGGAAGTAAAATCAGTAAGCAGAACCAACGCCAGACTCTAT
                      ____________________________________________________________
consensus             CTGCACAAGATCAATTCTAAGGAAGTAAAATCAGTAAGCAGAACCAACGCCAGACTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          TAATTGTAAAATCAACTGTTACGCGAGTATGTTGCACAGCTTTGTCCAGGACGTAAACCT
                      ____________________________________________________________
consensus             TAATTGTAAAATCAACTGTTACGCGAGTATGTTGCACAGCTTTGTCCAGGACGTAAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          CTCATATCAGGAGGGGTATTGATGAGAATCAGAGTCATCAAAGGTTCTGTTTAAGAGTAA
                      ____________________________________________________________
consensus             CTCATATCAGGAGGGGTATTGATGAGAATCAGAGTCATCAAAGGTTCTGTTTAAGAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          TTCCTTTGATCTTTACAGCAGCTTTGGGTCGATAATGGTTATCTGTATCCACTTCCTCAA
JMSF046N02+                     CTTTACAGCAGCTTTGGGTCGATAATGGTNATCNGTATCCACTTCCTCAA
                      ____________________________________________________________
consensus             TTCCTTTGATCTTTACAGCAGCTTTGGGTCGATAATGGTTATCTGTATCCACTTCCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          TTTCCTGAACAACATCTTCACCCTTGATGACACGCCCAAATACATTAATCTTGTCATTCA
JMSF046N02+           TTTCCTGAACAACATCTTCACCCTNGATGACACGCCCAAATACATTAATCTTGTCATTCA
                      ____________________________________________________________
consensus             TTTCCTGAACAACATCTTCACCCTTGATGACACGCCCAAATACATTAATCTTGTCATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          AATCTGGGATTGGTGCAGTTGTTATAAATATATCAAATCCTCGACCATCACGTTTTGCCT
JMSF046N02+           AATCTGGGATTGGTGCAGTTGTTATAAATATATCAAATCCTCGACCATCACGTTTTGCCT
                      ____________________________________________________________
consensus             AATCTGGGATTGGTGCAGTTGTTATAAATATATCAAATCCTCGACCATCACGTTTTGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          TGGAAGTACCAAGCATAAATGCTTCATGCTTCAGACTTGTGTCAAGGTGAGCATAATTTT
JMSF046N02+           TGGAAGTACCAAGCATAAATGCTTCATGCTTCAGACTTGTGTCAAGGTGAGCATAATTTT
                      ____________________________________________________________
consensus             TGGAAGTACCAAGCATAAATGCTTCATGCTTCAGACTTGTGTCAAGGTGAGCATAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          TTACCCTCGAAGTCCAATCTTCTGTAGTCTCAGGCCTTTCCTCTTTACTACCGTGGATAA
JMFF033G24+                               TCTGTAGTCTCAGGCCTTTCCTCTTTACTACCGTGGATAA
JMSF046N02+           TTACCCTCGAAGTCCAATCTTCTGTAGTTTCAGGCCTTTCCTCTTTACTACCGTGGATAA
JMSF036K12+                               TCTGTAGTTTCAGGCCTTTCCTCTTTACTACCGTGGATAA
                      ____________________________________________________________
consensus             TTACCCTCGAAGTCCAATCTTCTGTAGTCTCAGGCCTTTCCTCTTTACTACCGTGGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          CAAAGTTCTTAATAACACGATTAAATTGCATCCCATCAAAGTGGTCCTTCGCACACAAAT
JMFF033G24+           CAAAGTTCTTAATAACACGATTAAATTGCATCCCATCAAAGTGGTCCTTCGCACACAAAT
JMSF046N02+           CAAAGTTCTTAATAACACGATTAAATTGCATCCCATCAAAGTGGTCCTTCGCACACAAAT
JMSF036K12+           CAAAGTTCTTAATAACACGATTAAATTGCATCCCATCAAAGTGGTCCTTCGCACACAAAT
                      ____________________________________________________________
consensus             CAAAGTTCTTAATAACACGATTAAATTGCATCCCATCAAAGTGGTCCTTCGCACACAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          CAATGAATTCTTCAACAACTTCAGGAGAGCCATCCTTGTAAAGCTCAACAGTTATCAAGC
JMFF033G24+           CAATGAATTCTTCAACAACTTCAGGAGAGCCATCCTTGTAAAGCTCAACAGTTATCAAGC
JMSF046N02+           CAATGAATTCTTCAACAACTTCAGGAGAGCCATCCTNGTAAAGCTCAACAGTTATCAAGC
JMSF036K12+           CAATGAATTCTTCAACAACTTCAGGAGAGCCATCCTTGTAAAGCTCAACAGTTATCAAGC
                      ____________________________________________________________
consensus             CAATGAATTCTTCAACAACTTCAGGAGAGCCATCCTTGTAAAGCTCAACAGTTATCAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          CCTTTGTGGTGCTTATGAGAGCATATTTAGCAACATCAGAATTTCTCTGCCCCGCGAAAA
JMFF033G24+           CCTTTGTGGTGCTTATGAGAGCATATTTAGCAACATCAGAATTTCTCTGCCCCGCGAAAA
JMSF046N02+           CCTTTGTGGTGCTTATGAGAGCATATTTAGCAACATCAGAATTTCTCTGCCCCGCGAAAA
JMSF036K12+           CCTTTGTGGTGCTTATGAGAGCATATTTAGCAACATCAGAATTTCTCTGCCCCGCGAAAA
                      ____________________________________________________________
consensus             CCTTTGTGGTGCTTATGAGAGCATATTTAGCAACATCAGAATTTCTCTGCCCCGCGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033G24-          GAGCTTCACCCTCGCCTACATCTGNTTGAAGCATGGGCCTCC                  
JMFF033G24+           GAGCTTCACCCTCGCCTACATCTGTTTGAAGCATGGGCCTCCTCGACCAGTGCTTGTACG
JMSF046N02+           GAGCTTCACCCTCGCCTACATCTGTTTGAAGCATGGGCCTCCTCGACCAGTGCTTGTACG
JMSF036K12+           GAGCTTCACCCTCGCCTACATCTGTTTGAAGCATGGGCCTCCTCGACCAGTGCTTGTACG
                      ____________________________________________________________
consensus             GAGCTTCACCCTCGCCTACATCTGTTTGAAGCATGGGCCTCCTCGACCAGTGCTTGTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033G24+           TAGCAAACAGGAAAAACACCATTACTGCAGCAACAAGTATGTATATGATGATTGTTGTAG
JMSF046N02+           TAGCAAACAGGAAAAACACCATTACTGCAGCAACAAGTATGTATATGATGATTGTTGTAG
JMSF036K12+           TAGCAAACAGGAAAAACACCATTACTGCAGCAACAAGTATGTATATGATGATTGTTGTAG
                      ____________________________________________________________
consensus             TAGCAAACAGGAAAAACACCATTACTGCAGCAACAAGTATGTATATGATGATTGTTGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033G24+           CACTAATACGACTAGGACCCTTCTTCTTTTTGCTTTGCAGCAAAAGTGCTTGAGGTTTTA
JMSF046N02+           CACTAATACGACTAGGACCCTTCTTCTTTTTGCTTTGCAGCAAAAGTGCTTGAGGTTTTA
JMSF036K12+           CACTAATACGACTAGGACCCTTCTTCTTTTTGCTTTGCAGCAAAAGTGCTTGAGGTTTTA
                      ____________________________________________________________
consensus             CACTAATACGACTAGGACCCTTCTTCTTTTTGCTTTGCAGCAAAAGTGCTTGAGGTTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033G24+           TCCTTGCCATGAGAGTTTAGTAGTTTACAACCTTCTGGTATTGATCCCTGTAGTCGACTA
JMSF046N02+           TCCTTGCCATGAGAGTTTAGTAGTTTACAACCTTNTGGTATTGATCCCNGTAGTCGACTA
JMSF036K12+           TCCTTGCCATGAGAGTTTAGTAGTTTACAACCTTCTGGTATTGATCCCNGTAGTCGACTA
                      ____________________________________________________________
consensus             TCCTTGCCATGAGAGTTTAGTAGTTTACAACCTTCTGGTATTGATCCCTGTAGTCGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033G24+           GATCGATTGTTTGTTGGTTTCCCTTTCTTCTTCACTGACT                    
JMSF046N02+           GATCGATTGTTTGTTGGTTTCCCTTTCTTCTTCACTGACTGTTCTTCGTTCTCTCAGGCG
JMSF036K12+           GATCGATTGTTTGTTGGTTTCCCTTTCTTCTTCACTGACTGTTCTTCGTTCTCTCAGGCG
                      ____________________________________________________________
consensus             GATCGATTGTTTGTTGGTTTCCCTTTCTTCTTCACTGACTGTTCTTCGTTCTCTCAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046N02+           AGGGGTT                                                     
JMSF036K12+           AGGGGTTAAGTAAAAGAAAGAAGACAGTTGATCAGACTTCTAATTTTGAAATCTCAACAT
                      ____________________________________________________________
consensus             AGGGGTTAAGTAAAAGAAAGAAGACAGTTGATCAGACTTCTAATTTTGAAATCTCAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036K12+           TTTTTTTTTAAATTTATTTTTTGTTAAATCTTTTTTGTTCGTTTGTTACCTACTCCGTTC
                      ____________________________________________________________
consensus             TTTTTTTTTAAATTTATTTTTTGTTAAATCTTTTTTGTTCGTTTGTTACCTACTCCGTTC