Contig 006614:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011F03Sequence618006614 (4)ref|XP_009631155.1|1e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]
JMFN037B17Sequence607006614 (4)ref|XP_009631155.1|1e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]
JMSF036D20Sequence688006614 (4)ref|XP_009631155.1|3e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]738006614 (4)ref|XP_009631155.1|5e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF036D20-                                                    AGCATTAACATTACCAAT
                      ____________________________________________________________
consensus                                                       AGCATTAACATTACCAAT
 
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rJMSF036D20-          CCAGATCCAATTAAGAGCAGCTATACAGATAAAAGAAGATGAATACCGATTCAAAACTAT
JMSF036D20+                                           AAGAAGATGAATACCGATTCAAAACTAT
                      ____________________________________________________________
consensus             CCAGATCCAATTAAGAGCAGCTATACAGATAAAAGAAGATGAATACCGATTCAAAACTAT
 
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JMFN011F03+                           TGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
rJMSF036D20-          TAGATTTCATGCCCTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
JMFN037B17+                                                CATGGTAAGGGAATGTATAAAAC
JMSF036D20+           TAGATTTCATGCCNTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
                      ____________________________________________________________
consensus             TAGATTTCATGCCCTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
 
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JMFN011F03+           TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
rJMSF036D20-          TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
JMFN037B17+           TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
JMSF036D20+           TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
                      ____________________________________________________________
consensus             TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
 
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JMFN011F03+           GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
rJMSF036D20-          GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
JMFN037B17+           GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
JMSF036D20+           GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
                      ____________________________________________________________
consensus             GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
 
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JMFN011F03+           TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
rJMSF036D20-          TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
JMFN037B17+           TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
JMSF036D20+           TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
                      ____________________________________________________________
consensus             TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
 
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JMFN011F03+           AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
rJMSF036D20-          AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
JMFN037B17+           AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
JMSF036D20+           AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
                      ____________________________________________________________
consensus             AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
 
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JMFN011F03+           CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
rJMSF036D20-          CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
JMFN037B17+           CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
JMSF036D20+           CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
                      ____________________________________________________________
consensus             CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
 
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JMFN011F03+           TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
rJMSF036D20-          TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
JMFN037B17+           TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
JMSF036D20+           TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
                      ____________________________________________________________
consensus             TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
 
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JMFN011F03+           GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
rJMSF036D20-          GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
JMFN037B17+           GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
JMSF036D20+           GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
                      ____________________________________________________________
consensus             GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
 
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JMFN011F03+           TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
rJMSF036D20-          TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
JMFN037B17+           TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
JMSF036D20+           TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
                      ____________________________________________________________
consensus             TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
 
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JMFN011F03+           CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
rJMSF036D20-          CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
JMFN037B17+           CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
JMSF036D20+           CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
                      ____________________________________________________________
consensus             CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
 
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JMFN011F03+           CGGGGATCAGGTATCGGGGTGGGATGTCCTATTG                          
rJMSF036D20-          CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC
JMFN037B17+           CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTG                
JMSF036D20+           CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC
                      ____________________________________________________________
consensus             CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC