Contig 006610:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035E05-                                               AATCATATCTTCTTCCATTTTTT
rJMSF045I23-                                                                    TT
                      ____________________________________________________________
consensus                                                  AATCATATCTTCTTCCATTTTTT
 
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rJMSF035E05-          TTCTGAGATAACAAAAGAGAGAAAAAGGACCCTTCTGTATACAATATACTGGTTCCAATC
rJMSF045I23-          TTCTGAGATAACAAAAGAGAGAAAAAGGACCCTTCTGTATACAATATACT-GTTCCAATC
                      ____________________________________________________________
consensus             TTCTGAGATAACAAAAGAGAGAAAAAGGACCCTTCTGTATACAATATACTGGTTCCAATC
 
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rJMSF035E05-          CCCCAAGAACAAACCTTTCTTTCTGTACACTGTGTTCCCATCCCTCAAACAGAAGAAAAA
rJMSF045I23-          CCCCAAGAACAAACCTTTCTTTCTGTACACTGTGTTCCCATCCCTCAAACAGAAGAAAAA
                      ____________________________________________________________
consensus             CCCCAAGAACAAACCTTTCTTTCTGTACACTGTGTTCCCATCCCTCAAACAGAAGAAAAA
 
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rJMSF035E05-          GAGCAGAGTGCTGGCTCACAGATCGATCTCTTCATTTCCGCCTATAAACTTCCATCAATA
rJMSF045I23-          GAGCAGAGTGCTGGCTCACAGATCGATCTCTTCATTTCCGCCTATAAACTTCCATCAATA
                      ____________________________________________________________
consensus             GAGCAGAGTGCTGGCTCACAGATCGATCTCTTCATTTCCGCCTATAAACTTCCATCAATA
 
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rJMSF035E05-          ATGAACCCCGCCACTGATAACAGACACTCGGTAAGCTAAGAATAGAATAGAATAGTCTTT
rJMSF045I23-          ATGAACCCCGCCACTGATAACAGACACTCGGTAAGCTAAGAATAGAATAGAATAGTCTTT
                      ____________________________________________________________
consensus             ATGAACCCCGCCACTGATAACAGACACTCGGTAAGCTAAGAATAGAATAGAATAGTCTTT
 
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rJMSF035E05-          TACGTTGACATGCTGGTTTGGTGGTATTCCCAAATCCCAATTCATCAATTGTTATCAGGA
rJMSF045I23-          TACGTTGACATGCTGGTTTGGTGGTATTCCCAAATCCCAATTCATCAATTGTTATCAGGA
                      ____________________________________________________________
consensus             TACGTTGACATGCTGGTTTGGTGGTATTCCCAAATCCCAATTCATCAATTGTTATCAGGA
 
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rJMSF035E05-          TTTGGATTTAGGCTGCTGAATCTATAATGGTACAACGCGTTGCATTCTGTAAATCGCAGG
rJMSF045I23-          TTTGGATTTAGGCTGCTGAATCTATAATGGTACAACGCGTTGCATTCTGTAAATCGCAGG
                      ____________________________________________________________
consensus             TTTGGATTTAGGCTGCTGAATCTATAATGGTACAACGCGTTGCATTCTGTAAATCGCAGG
 
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rJMSF035E05-          GGCCCTACACCAGGTGGATCCACCGGCAATAACCAGAGATGCTATCTATACGATCAAACG
rJMSF045I23-          GGCCCTACACCAGGTGGATCCACCGGCAATAACCAGAGATGCTATCTATACGATCAAACG
                      ____________________________________________________________
consensus             GGCCCTACACCAGGTGGATCCACCGGCAATAACCAGAGATGCTATCTATACGATCAAACG
 
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rJMSF035E05-          TGCATTGCTCTGTAAGAACAACCAAGTATGTATTGTCAATAGTCCTTGCAATCTTTAGTA
rJMSF045I23-          TGCATTGCTCTGTAAGAACAACCAAGTATGTATTGTCAATAGTCCTTGCAATCTTTAGTA
                      ____________________________________________________________
consensus             TGCATTGCTCTGTAAGAACAACCAAGTATGTATTGTCAATAGTCCTTGCAATCTTTAGTA
 
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rJMSF035E05-          GGCCTAGCTTCCAAACCCCCATCTGCTCTTAGTTGTAGTTCGTAAGGCATATAAGTACCA
rJMSF045I23-          GGCCTAGCTTCCAAACCCCCATCTGCTCTTAGTTGTAGTTCGTAAGGCATATAAGTACCA
                      ____________________________________________________________
consensus             GGCCTAGCTTCCAAACCCCCATCTGCTCTTAGTTGTAGTTCGTAAGGCATATAAGTACCA
 
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rJMSF035E05-          AGTATTCTATCCCATGTCACAAAGAAAGGTTGTGAAAAGTTGTATTTGTTTCCATAAAGC
rJMSF045I23-          AGTATTCTATCCCATGTCACAAAGAAAGGTTGTGAAAAGTTGTATTTGTTTCCATAAAGC
JMSF045I23+                                          GTGAAAAGTTGTATTTGTTTCCATAAAGC
                      ____________________________________________________________
consensus             AGTATTCTATCCCATGTCACAAAGAAAGGTTGTGAAAAGTTGTATTTGTTTCCATAAAGC
 
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rJMSF035E05-          TGGTGATGGATGTCATGGTATGCAGAATTATTCTTAAAGAA                   
rJMSF045I23-          TGGTGATGGATGTCATGGTATGCAGAATTATTCTTAAAGAAGATATGGAAAA        
JMSF045I23+           TGGTGATGGATGTCATGGTATGCAGAATTATTNTTAAAGAAGATATGGAAAAGGTTNCCC
                      ____________________________________________________________
consensus             TGGTGATGGATGTCATGGTATGCAGAATTATTCTTAAAGAAGATATGGAAAAGGTTNCCC
 
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JMSF045I23+           CGGAAGCCATAGACCACAATGATCATCAACTGTCTTTATAGTAGCAAAGGAGAAAAAGAA
                      ____________________________________________________________
consensus             CGGAAGCCATAGACCACAATGATCATCAACTGTCTTTATAGTAGCAAAGGAGAAAAAGAA
 
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JMSF045I23+           GATTGAAGCTCGAGGAGACATGCCCGAAGCAAGGAAAGACAGAGCACCACCAATAGTATC
                      ____________________________________________________________
consensus             GATTGAAGCTCGAGGAGACATGCCCGAAGCAAGGAAAGACAGAGCACCACCAATAGTATC
 
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JMSF045I23+           AAGAATCAGACCCTCAAGAGGATGATTGTATAAAGCTCCAAAAGCATACGGGACAACAAT
JMSF035E05+                       CTCAAGAGGATGATTGTATAAAGCTCCAAAAGCATACGGGACAACAAT
                      ____________________________________________________________
consensus             AAGAATCAGACCCTCAAGAGGATGATTGTATAAAGCTCCAAAAGCATACGGGACAACAAT
 
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JMSF045I23+           CCGGTGATGTTGAGAATGAATGTGCCGGTACAAAAACTTGTTTTGATGCATGTACCTGTG
JMSF035E05+           CCGGTGATGTTGAGAATGAATGTGCCGGTACAAAAACTTGTTTTGATGCATGTACCTGTG
                      ____________________________________________________________
consensus             CCGGTGATGTTGAGAATGAATGTGCCGGTACAAAAACTTGTTTTGATGCATGTACCTGTG
 
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JMSF045I23+           CATAAAATACTGCCAAGTATCTAATACCACCATTGCAATAATAAATTGCCTTGCAAGAAC
JMSF035E05+           CATAAAATACTGCCAAGTATCTAATACCACCATTGCAATAATAAATTGCCTTGCAAGAAC
                      ____________________________________________________________
consensus             CATAAAATACTGCCAAGTATCTAATACCACCATTGCAATAATAAATTGCCTTGCAAGAAC
 
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JMSF045I23+           AAGAAATGATTTCTGGTTTATAGCAACCTCACCATCATTTCCAGTGACCGCGAAGAGGAT
JMSF035E05+           AAGAAATGATTTCTGGTTTATAGCAACCTCACCATCATTTCCAGTGACCGCGAAGAGGAT
                      ____________________________________________________________
consensus             AAGAAATGATTTCTGGTTTATAGCAACCTCACCATCATTTCCAGTGACCGCGAAGAGGAT
 
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JMSF045I23+           GGTGGCAACAATTGCCTGCACCGCCTGCTGGAGAACAACACCTTTCACAACATCCGCCTT
JMSF035E05+           GGTGGCAACAATTGCCTGCACCGCCTGCTGGAGAACAACACCTTTCACAACATCCGCCTT
                      ____________________________________________________________
consensus             GGTGGCAACAATTGCCTGCACCGCCTGCTGGAGAACAACACCTTTCACAACATCCGCCTT
 
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JMSF045I23+           GGAAACCAAGTTCTTCTCATCTTCTTCCTTCTTGGAATGCAGCCTGTAATTATGCAGACC
JMSF035E05+           GGAAACCAAGTTCTTCTCATCTTCTTCCTTCTTGGAATGCAGCCTGTAATTATGCAGACC
                      ____________________________________________________________
consensus             GGAAACCAAGTTCTTCTCATCTTCTTCCTTCTTGGAATGCAGCCTGTAATTATGCAGACC
 
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JMSF045I23+           TCCCAGGATTGAGTATAGCCCTGAATAGAGCCAATACACCACTATCGGCATAAACGTCCC
JMSF035E05+           TCCCAGGATTGAGTATAGCCCTGAATAGAGCCAATACACCACTATCGGCATAAACGTCCC
                      ____________________________________________________________
consensus             TCCCAGGATTGAGTATAGCCCTGAATAGAGCCAATACACCACTATCGGCATAAACGTCCC
 
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JMSF045I23+           CAACAGTTCATCTGAAACATCCATTTCCCTCTATACTCTCTTAGATGAAAATATGTACGT
JMSF035E05+           CAACAGTTCATCTGAAACATCCATTTCCCTCTATACTCTCTTAGATGAAAATATGTACGT
                      ____________________________________________________________
consensus             CAACAGTTCATCTGAAACATCCATTTCCCTCTATACTCTCTTAGATGAAAATATGTACGT
 
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JMSF045I23+           ATATAATGTTCCGTAGTTGTATATAAATCTACGTACAAAAATATATAGAGAGATAGAAGG
JMSF035E05+           ATATAATGTTCCGTAGTTGTATATAAATCTACGTACAAAAATATATAGAGAGATAGAAGG
                      ____________________________________________________________
consensus             ATATAATGTTCCGTAGTTGTATATAAATCTACGTACAAAAATATATAGAGAGATAGAAGG
 
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JMSF045I23+           GGAAATTTAAAGCTAGGGTTTCAGATGAATTTGTTTGAG                     
JMSF035E05+           GGAAATTTAAAGCTAGGGTTTCAGATGAATTTGTTTGAGAAGGATTGAAAAAAATTTCTT
                      ____________________________________________________________
consensus             GGAAATTTAAAGCTAGGGTTTCAGATGAATTTGTTTGAGAAGGATTGAAAAAAATTTCTT
 
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JMSF035E05+           TGGAAATATATAAATTGTCGGGTAGATGACGTGGCAAAACGGCGGCAAAGAACTGTTCCC
                      ____________________________________________________________
consensus             TGGAAATATATAAATTGTCGGGTAGATGACGTGGCAAAACGGCGGCAAAGAACTGTTCCC