Contig 006608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L06Sequence473006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph273012209 (10)
JMFF011J12Sequence466006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph430012209 (10)
JMFF026D06Sequence456006608 (10)ref|XP_011031070.1|6e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph481012209 (10)ref|XP_009588928.1|2e-13PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMFF026E02Sequence551006608 (10)gb|KJB18237.1|3e-13hypothetical protein B456_003G041500 [Gossypium raimondii]528012209 (10)ref|XP_009588928.1|1e-09PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMFS081H06Sequence619006608 (10)gb|KJB18237.1|4e-35hypothetical protein B456_003G041500 [Gossypium raimondii]
JMFS130A11Sequence521006608 (10)gb|KJB18237.1|2e-19hypothetical protein B456_003G041500 [Gossypium raimondii]
JMSF015I21Sequence232006608 (10)262012209 (10)
JMSF022B08Sequence580006608 (10)gb|KJB18238.1|2e-21hypothetical protein B456_003G041500 [Gossypium raimondii]297012209 (10)
JMSF035A02Sequence586006608 (10)gb|KJB18237.1|3e-22hypothetical protein B456_003G041500 [Gossypium raimondii]726012209 (10)ref|XP_009588928.1|3e-48PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMSF043A04Sequence466006608 (10)ref|XP_011031070.1|2e-10PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph557012209 (10)ref|XP_009588928.1|4e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS081H06+ CCGCCACCTGTCTAGGCTGCAGCCCAAGCTCCTGGGCCAAC
                      ____________________________________________________________
consensus CCGCCACCTGTCTAGGCTGCAGCCCAAGCTCCTGGGCCAAC
 
. : . : . : . : . : . :
JMFS081H06+ TTCACCTTCCTCTCCGGCTCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMSF022B08+ TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMFF026E02+ TCCAAAGCCTTC
JMFS130A11+ TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMSF035A02+ TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
                      ____________________________________________________________
consensus TTCACCTTCCTCTCCGGCTCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
 
. : . : . : . : . : . :
JMFS081H06+ ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMSF022B08+ ACTTGCTCCACACTCAACCGCCGCTTNTTTTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMFF026E02+ ACTTGCTCCACACTCAACCGCCGCTTTTTNTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMFS130A11+ ACTTGCTCCACACTCAACCACCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMSF035A02+ ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
                      ____________________________________________________________
consensus ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
 
. : . : . : . : . : . :
JMFS081H06+ TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF001L06+ CGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF026D06+ GTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF011J12+ CGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF043A04+ GCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF022B08+ TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF026E02+ TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFS130A11+ TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF035A02+ TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
                      ____________________________________________________________
consensus TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
 
. : . : . : . : . : . :
JMFS081H06+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF001L06+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF026D06+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF011J12+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF043A04+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF022B08+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF026E02+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFS130A11+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF035A02+ TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
                      ____________________________________________________________
consensus TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
 
. : . : . : . : . : . :
JMFS081H06+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF001L06+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF026D06+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF011J12+ CTGCCCAGTGATCTCTTCATGACTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF043A04+ CTGCCCAGTGATCTCTTCATGNCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF022B08+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF026E02+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFS130A11+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF035A02+ CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
                      ____________________________________________________________
consensus CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
 
. : . : . : . : . : . :
JMFS081H06+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF001L06+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF026D06+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF011J12+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF043A04+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF022B08+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF026E02+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFS130A11+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF035A02+ GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
                      ____________________________________________________________
consensus GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
 
. : . : . : . : . : . :
JMFS081H06+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF001L06+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF026D06+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF011J12+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF043A04+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF015I21+ GCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF022B08+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF026E02+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFS130A11+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF035A02+ AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
                      ____________________________________________________________
consensus AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
 
. : . : . : . : . : . :
JMFS081H06+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF001L06+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF026D06+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF011J12+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF043A04+ GCTACTTCATCCACCTCACAANTCATG-AAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF015I21+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF022B08+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF026E02+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFS130A11+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF035A02+ GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
                      ____________________________________________________________
consensus GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
 
. : . : . : . : . : . :
JMFS081H06+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF001L06+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF026D06+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF011J12+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAG-ATAATGGTTTTGA
JMSF043A04+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMSF015I21+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMSF022B08+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF026E02+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFS130A11+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTG
JMSF035A02+ ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
                      ____________________________________________________________
consensus ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
 
. : . : . : . : . : . :
JMFS081H06+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGAT
JMFF001L06+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC
JMFF026D06+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGAT
JMFF011J12+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACC
JMSF043A04+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC
JMSF015I21+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC
JMSF022B08+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC
JMFF026E02+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC
JMSF035A02+ AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTCAGAACCC
                      ____________________________________________________________
consensus AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTCAGAACCC