Contig 006608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L06Sequence473006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph273012209 (10)
JMFF011J12Sequence466006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph430012209 (10)
JMFF026D06Sequence456006608 (10)ref|XP_011031070.1|6e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph481012209 (10)ref|XP_009588928.1|2e-13PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMFF026E02Sequence551006608 (10)gb|KJB18237.1|3e-13hypothetical protein B456_003G041500 [Gossypium raimondii]528012209 (10)ref|XP_009588928.1|1e-09PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMFS081H06Sequence619006608 (10)gb|KJB18237.1|4e-35hypothetical protein B456_003G041500 [Gossypium raimondii]
JMFS130A11Sequence521006608 (10)gb|KJB18237.1|2e-19hypothetical protein B456_003G041500 [Gossypium raimondii]
JMSF015I21Sequence232006608 (10)262012209 (10)
JMSF022B08Sequence580006608 (10)gb|KJB18238.1|2e-21hypothetical protein B456_003G041500 [Gossypium raimondii]297012209 (10)
JMSF035A02Sequence586006608 (10)gb|KJB18237.1|3e-22hypothetical protein B456_003G041500 [Gossypium raimondii]726012209 (10)ref|XP_009588928.1|3e-48PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMSF043A04Sequence466006608 (10)ref|XP_011031070.1|2e-10PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph557012209 (10)ref|XP_009588928.1|4e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform

Alignment

This contig is upended


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JMFS081H06+                              CCGCCACCTGTCTAGGCTGCAGCCCAAGCTCCTGGGCCAAC
                      ____________________________________________________________
consensus                                CCGCCACCTGTCTAGGCTGCAGCCCAAGCTCCTGGGCCAAC
 
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JMFS081H06+           TTCACCTTCCTCTCCGGCTCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMSF022B08+                             TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMFF026E02+                                                           TCCAAAGCCTTC
JMFS130A11+                             TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
JMSF035A02+                             TCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
                      ____________________________________________________________
consensus             TTCACCTTCCTCTCCGGCTCCAGCTTGTTCTCCACCTCAAAATTCTTCTCCAAAGCCTTC
 
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JMFS081H06+           ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMSF022B08+           ACTTGCTCCACACTCAACCGCCGCTTNTTTTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMFF026E02+           ACTTGCTCCACACTCAACCGCCGCTTTTTNTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMFS130A11+           ACTTGCTCCACACTCAACCACCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
JMSF035A02+           ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
                      ____________________________________________________________
consensus             ACTTGCTCCACACTCAACCGCCGCTTCTTCTCCGCCACACGGCCGCCGCCGCCGTCTTCC
 
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JMFS081H06+           TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF001L06+            CGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF026D06+             GTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF011J12+            CGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF043A04+                  GCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF022B08+           TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFF026E02+           TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMFS130A11+           TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
JMSF035A02+           TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
                      ____________________________________________________________
consensus             TCGTCAAGCCCTTCCAACATCGACTGAAACTCCCCCGCGTACACATGGCTGCTGTTCCCT
 
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JMFS081H06+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF001L06+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF026D06+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF011J12+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF043A04+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF022B08+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFF026E02+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMFS130A11+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
JMSF035A02+           TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
                      ____________________________________________________________
consensus             TGACTGGGATCATCTGTAGTGGGTGGACAGATGGACATGAGAGCGCCCAGGGAATCAGAG
 
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JMFS081H06+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF001L06+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF026D06+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF011J12+           CTGCCCAGTGATCTCTTCATGACTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF043A04+           CTGCCCAGTGATCTCTTCATGNCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF022B08+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFF026E02+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMFS130A11+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
JMSF035A02+           CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
                      ____________________________________________________________
consensus             CTGCCCAGTGATCTCTTCATGGCTGCTGGGTAAAAAACTCAATCAAAAACACTTTCAAGA
 
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JMFS081H06+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF001L06+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF026D06+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF011J12+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF043A04+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF022B08+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFF026E02+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMFS130A11+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
JMSF035A02+           GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
                      ____________________________________________________________
consensus             GTTCAGATCGGAGCACCCTTTGTTTAGATTATATATGGTTTTTGGTTCTTGGAATTATGA
 
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JMFS081H06+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF001L06+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF026D06+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF011J12+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF043A04+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF015I21+             GCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF022B08+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFF026E02+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMFS130A11+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
JMSF035A02+           AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
                      ____________________________________________________________
consensus             AAGCCTTTTCCCTCTTGTTTGAGCAGAAAGACTCCATTTTTAAGTCTTAATAATAACAAT
 
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JMFS081H06+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF001L06+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF026D06+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF011J12+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF043A04+           GCTACTTCATCCACCTCACAANTCATG-AAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF015I21+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF022B08+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFF026E02+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMFS130A11+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
JMSF035A02+           GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
                      ____________________________________________________________
consensus             GCTACTTCATCCACCTCACAACTCATGAAAAACAGAAGCAAATTACAAGAAATGAAACCC
 
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JMFS081H06+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF001L06+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF026D06+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF011J12+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAG-ATAATGGTTTTGA
JMSF043A04+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMSF015I21+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMSF022B08+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFF026E02+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
JMFS130A11+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTG 
JMSF035A02+           ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
                      ____________________________________________________________
consensus             ACCCACACTCTTTCATTCTACACTCTGGAGAGTATTGATATTGAAGAATAATGGTTTTGA
 
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JMFS081H06+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGAT                      
JMFF001L06+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC       
JMFF026D06+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGAT                      
JMFF011J12+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACC            
JMSF043A04+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC       
JMSF015I21+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC       
JMSF022B08+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC       
JMFF026E02+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTC       
JMSF035A02+           AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTCAGAACCC
                      ____________________________________________________________
consensus             AAAACAGAGAGAGAGAGAGAGAGGGAGAGGAGAGAGATGAGTAAAACCAGTTCAGAACCC