Contig 006605:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN018J18Sequence610006605 (3)ref|XP_009771818.1|218PREDICTED: uncharacterized protein LOC104222288 [Nicotiana sylvestris]
JMSF034M11Sequence629006605 (3)ref|XP_009771818.1|218PREDICTED: uncharacterized protein LOC104222288 [Nicotiana sylvestris]666006605 (3)ref|XP_009771818.1|218PREDICTED: uncharacterized protein LOC104222288 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034M11- GTAGTC
                      ____________________________________________________________
consensus GTAGTC
 
. : . : . : . : . : . :
JMFN018J18+ GAAGATTTAACAACAATTAATTTC
rJMSF034M11- ATTGACAGTTCAAACAATCCAATCTGTTTTACAAGAGAAGATTTAACAACAATTAATTTC
JMSF034M11+ GAAGATTTAACAACAATTAATTTC
                      ____________________________________________________________
consensus ATTGACAGTTCAAACAATCCAATCTGTTTTACAAGAGAAGATTTAACAACAATTAATTTC
 
. : . : . : . : . : . :
JMFN018J18+ TACCTCAAATGTATGCAGAGAACTATCAATTGATTTGTTTACTAAGCTACATAACAGACT
rJMSF034M11- TACCTCAAATGTATGCAGAGAACTATCAATTGATTTGTTTACTAAGCTACATAACAGACT
JMSF034M11+ TACCTCAAATGTATGCAGAGAACTATCAATTGATTTGTTTACTAAGCTACATAACAGACT
                      ____________________________________________________________
consensus TACCTCAAATGTATGCAGAGAACTATCAATTGATTTGTTTACTAAGCTACATAACAGACT
 
. : . : . : . : . : . :
JMFN018J18+ AGTTTTCATCTCCTTTCTCCTTATTTCTGTCCTTACAGTTACAAGAAAAACATACTATGT
rJMSF034M11- AGTTTTCATCTCCTTTCTCCTTATTTCTGTCCTTACAGTTACAAGAAAAACATACTATGT
JMSF034M11+ AGTTTTCATCTCCTTTCTCCTTATTTCTGTCCTTACAGTTACAAGAAAAACATACTATGT
                      ____________________________________________________________
consensus AGTTTTCATCTCCTTTCTCCTTATTTCTGTCCTTACAGTTACAAGAAAAACATACTATGT
 
. : . : . : . : . : . :
JMFN018J18+ AGTAATGAAAAAGAGAAGCTAGTGGTTCTTGTATCTCTTTTCTACTTCTTCCATACTCTG
rJMSF034M11- AGTAATGAAAAAGAGAAGCTAGTGGTTCTTGTATCTCTTTTCTACTTCTTCCATACTCTG
JMSF034M11+ AGTAATGAAAAAGAGAAGCTAGTGGTTCTTGTATCTCTTTTCTACTTCTTCCATACTCTG
                      ____________________________________________________________
consensus AGTAATGAAAAAGAGAAGCTAGTGGTTCTTGTATCTCTTTTCTACTTCTTCCATACTCTG
 
. : . : . : . : . : . :
JMFN018J18+ AATCTCTTTGTAGTACTTGCAAACGCGATATATACACCAGTAGAGAAGGCATGCTACCAT
rJMSF034M11- AATCTCTTTGTAGTACTTGCAAACGCGATATATACACCAGTAGAGAAGGCATGCTACCAT
JMSF034M11+ AATCTCTTTGTAGTACTTGCAAACGCGATATATACACCAGTAGAGAAGGCATGCTACCAT
                      ____________________________________________________________
consensus AATCTCTTTGTAGTACTTGCAAACGCGATATATACACCAGTAGAGAAGGCATGCTACCAT
 
. : . : . : . : . : . :
JMFN018J18+ GCAAAGAATTGCATTCCTCTGAGCCTTGTAGATCGATTTCTCATAGCGATCCCTCTCCAA
rJMSF034M11- GCAAAGAATTGCATTCCTCTGAGCCTTGTAGATCGATTTCTCATAGCGATCCCTCTCCAA
JMSF034M11+ GCAAAGAATTGCATTCCTCTGAGCCTTGTAGATCGATTTCTCATAGCGATCCCTCTCCAA
                      ____________________________________________________________
consensus GCAAAGAATTGCATTCCTCTGAGCCTTGTAGATCGATTTCTCATAGCGATCCCTCTCCAA
 
. : . : . : . : . : . :
JMFN018J18+ AGCAGTGCAGATCTCGCCCGTGCACATCAATCGATGCTCATTTTTCCAATAGATATCGAG
rJMSF034M11- AGCAGTGCAGATCTCGCCCGTGCACATCAATCGATGCTCATTTTTCCAATAGATATCGAG
JMSF034M11+ AGCAGTGCAGATCTCGCCCGTGCACATCAATCGATGCTCATTTTTCCAATAGATATCGAG
                      ____________________________________________________________
consensus AGCAGTGCAGATCTCGCCCGTGCACATCAATCGATGCTCATTTTTCCAATAGATATCGAG
 
. : . : . : . : . : . :
JMFN018J18+ GAGCTGGAAAGCGGCAAAGGGAACTACGAAGAATGAAGGTTGAAGGGCGAGCGAGATTAG
rJMSF034M11- GAGCTGGAAAGCGGCAAAGGGAACTACGAAGAATGAAGGTTGAAGGGCGAGCGAGATTAG
JMSF034M11+ GAGCTGGAAAGCGGCAAAGGGAACTACGAAGAATGAAGGTTGAAGGGCGAGCGAGATTAG
                      ____________________________________________________________
consensus GAGCTGGAAAGCGGCAAAGGGAACTACGAAGAATGAAGGTTGAAGGGCGAGCGAGATTAG
 
. : . : . : . : . : . :
JMFN018J18+ AGAGACGATACGCGATTTGAGAGCCTTGGGAGAAGGCAGCGTTATGAGAATAGCGACGGC
rJMSF034M11- AGAGACGATACGCGATTTGAGAGCCTTGGGAGAAGGCAGCGTTATGAGAATAGCGACGGC
JMSF034M11+ AGAGACGATACGCGATTTGAGAGCCTTGGGAGAAGGCAGCGTTATGAGAATAGCGACGGC
                      ____________________________________________________________
consensus AGAGACGATACGCGATTTGAGAGCCTTGGGAGAAGGCAGCGTTATGAGAATAGCGACGGC
 
. : . : . : . : . : . :
JMFN018J18+ CACCTCCGCCGCCACAACGTACGCTAGTATCATCCACTGCAACGCCATTGTTAAGTGCTT
rJMSF034M11- CACCTCCGCCGCCACAACGTACGCTAGTATCATCCACTGCAACGCCATTGTTAAGTGCTT
JMSF034M11+ CACCTCCGCCGCCACAACGTACGCTAGTATCATCCACTGCAACGCCATTGTTAAGTGCTT
                      ____________________________________________________________
consensus CACCTCCGCCGCCACAACGTACGCTAGTATCATCCACTGCAACGCCATTGTTAAGTGCTT
 
. : . : . : . : . : . :
JMFN018J18+ TGCTGTTACAATTGCTAAGAGAAGAAGAGAGTGAAAAAGAAGTAAA
rJMSF034M11- TGCTGTTACAATTGCTAAGAGAAGAAGAGAGTGAAAAAGAAGTAAATGTATTATTCAACC
JMSF034M11+ TGCTGTTACAATTGCTAAGAGAAGAAGAGAGTGAAAAAGAAGTAAATGTATTATTCAACC
                      ____________________________________________________________
consensus TGCTGTTACAATTGCTAAGAGAAGAAGAGAGTGAAAAAGAAGTAAATGTATTATTCAACC