Contig 006604:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029C12Sequence602006604 (4)ref|XP_007023462.1|3e-66Magnesium transporter 2 isoform 2 [Theobroma cacao] gb|EOY26084.1| Magnesium tra670009716 (5)ref|XP_009764804.1|4e-75PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]
JMSF030C11Sequence658006604 (4)ref|XP_011034560.1|3e-76PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]811009716 (5)ref|XP_009764804.1|2e-95PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]
JMSF032C21Sequence656006604 (4)ref|XP_011034560.1|1e-74PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]673009716 (5)ref|XP_009764804.1|5e-80PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]
JMSF034L23Sequence682006604 (4)ref|XP_009761375.1|1e-67PREDICTED: magnesium transporter MRS2-1-like [Nicotiana sylvestris]687020452ref|XP_009764804.1|5e-36PREDICTED: magnesium transporter MRS2-1, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF030C11+                                                                     TC
                      ____________________________________________________________
consensus                                                                       TC
 
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JMSF030C11+           TCCTGCTCAAGTCAGAACTTTCTGATTGCCAAACCTCACCAACCCCAGAAGATTGTAGCC
JMSF032C21+               GCTCAAGTCAGAACTTTCTGATTGCCAAACCTCACCAACCCCAGAAGATTGTAGCC
JMFF029C12+                                                                TGTAGCC
JMSF034L23+                                                 CCAACCCCAGAAGATTGTAGCC
                      ____________________________________________________________
consensus             TCCTGCTCAAGTCAGAACTTTCTGATTGCCAAACCTCACCAACCCCAGAAGATTGTAGCC
 
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JMSF030C11+           GCCGCTGCAACTCCACTACGTACTGCAGGACATAGCTATCAAGAGAATTTAAAAGCAGAA
JMSF032C21+           GCCGCTGCAACTCCACTACGTACTGCAGGACATAGCTATCAAGAGAATTTAAAAGCAGAA
JMFF029C12+           GCCGCTGCAACTCCACTACGTACTGCAGGACATAGCTATCAAGAGAATTTAAAAGCAGAA
JMSF034L23+           GCCGCTGCAACTCCACTACGTACTGCAGGACATAGCTATCAAGAGAATTTAAAAGCAGAA
                      ____________________________________________________________
consensus             GCCGCTGCAACTCCACTACGTACTGCAGGACATAGCTATCAAGAGAATTTAAAAGCAGAA
 
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JMSF030C11+           CATCATCTGCTGTTATAATACATCGAATCTGCTCAAGGTTTACAACAATAGCCCTCTCTC
JMSF032C21+           CATCATCTGCTGTTATAATACATCGAATCTGCTCAAGGTTTACAACAATAGCCCTCTCTC
JMFF029C12+           CATCATCTGCTGTTATAATACATCGAATCTGCTCAAGGTTTACAACAATAGCCCTCTCTC
JMSF034L23+           CATCATCTGCTGTTATAATACATCGAATCTGCTCAAGGTTTACAACAATAGCCCTCTCTC
                      ____________________________________________________________
consensus             CATCATCTGCTGTTATAATACATCGAATCTGCTCAAGGTTTACAACAATAGCCCTCTCTC
 
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JMSF030C11+           TGCCCAGTATTGTTGAGGGGTAAACAAACAACGGGTCAAGTAGACGTAGATCACGTGCTG
JMSF032C21+           TGCCCAGTATTGTTGAGGGGTAAACAAACAACGGGTCAAGTAGACGTAGATCACGTGCTG
JMFF029C12+           TGCCCAGTATTGTTGAGGGGTAAACAAACAACGGGTCAAGTAGACGTAGATCACGTGCTG
JMSF034L23+           TGCCCAGTATTGTTGAGGGGTAAACAAACAACGGGTCAAGTAGACGTAGATCACGTGCTG
                      ____________________________________________________________
consensus             TGCCCAGTATTGTTGAGGGGTAAACAAACAACGGGTCAAGTAGACGTAGATCACGTGCTG
 
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JMSF030C11+           GGAGATCACAACGCCGCATCACAGTAAACTTGTCAATTTCAATTACTTGAGAGTTCCCAG
JMSF032C21+           GGAGATCACAACGCCGCATCACAGTAAACTTGTCAATTTCAATTACTTGAGAGTTCCCAG
JMFF029C12+           GGAGATCACAACGCCGCATCACAGTAAACTTGTCAATTTCAATTACTTGAGAGTTCCCAG
JMSF034L23+           GGAGATCACAACGCCGCATCACAGTAAACTTGTCAATTTCAATTACTTGAGAGTTCCCAG
                      ____________________________________________________________
consensus             GGAGATCACAACGCCGCATCACAGTAAACTTGTCAATTTCAATTACTTGAGAGTTCCCAG
 
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JMSF030C11+           TAGCATCAACACGAATCCAGGATCTCAGTCCTTGGCCACGTTTTTTAAGGCCTAGGACAT
JMSF032C21+           TAGCATCAACACGAATCCAGGATCTCAGTCCTTGGCCACGTTTTTTAAGGCCTAGGACAT
JMFF029C12+           TAGCATCAACACGAATCCAGGATCTCAGTCCTTGGCCACGTTTTTTAAGGCCTAGGACAT
JMSF034L23+           TAGCATCAACACGAATCCAGGATCTCAGTCCTTGGCCACGTTTTTTAAGGCCTAGGACAT
                      ____________________________________________________________
consensus             TAGCATCAACACGAATCCAGGATCTCAGTCCTTGGCCACGTTTTTTAAGGCCTAGGACAT
 
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JMSF030C11+           CCAAAACTTGAAATGGACTACGGCCAGAGGCAGAAGCCCTGTAAGATGCATCTCTAAGAT
JMSF032C21+           CCAAAACTTGAAATGGACTACGGCCAGAGGCAGAAGCCCTGTAAGATGCATCTCTAAGAT
JMFF029C12+           CCAAAACTTGAAATGGACTACGGCCAGAGGCAGAAGCCCTGTAAGATGCATCTCTAAGAT
JMSF034L23+           CCAAAACTTGAAATGGACTACGGCCAGAGGCAGAAGCCCTGTAAGATGCATCTCTAAGAT
                      ____________________________________________________________
consensus             CCAAAACTTGAAATGGACTACGGCCAGAGGCAGAAGCCCTGTAAGATGCATCTCTAAGAT
 
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JMSF030C11+           TTGCAGCTGATGCAGGTTTGGGTGGAAGCAGACGCTCTTTGAGGTCAGGCATCACCAAGA
JMSF032C21+           TTGCAGCTGATGCAGGTTTGGGTGGAAGCAGACGCTCTTTGAGGTCAGGCATCACCAAGA
JMFF029C12+           TTGCAGCTGATGCAGGTTTGGGTGGAAGCAGACGCTCTTTGAGGTCAGGCATCACCAAGA
JMSF034L23+           TTGCAGCTGATGCAGGTTTGGGTGGAAGCAGACGCTCTTTGAGGTCAGGCATCACCAAGA
                      ____________________________________________________________
consensus             TTGCAGCTGATGCAGGTTTGGGTGGAAGCAGACGCTCTTTGAGGTCAGGCATCACCAAGA
 
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JMSF030C11+           TGTGTCCAAATCGGAAAACACCTCCGCCGCCGTAGAGTAAGAGCAGAATTACGTCGTAAC
JMSF032C21+           TGTGTCCAAATCGGAAAACACCTCCGCCGCCGTAGAGTAAGAGCAGAATTACGCCGTAAC
JMFF029C12+           TGTGTCCAAATCGGAAAACACCTCCGCCGCCGTAGAGTAAGAGCAGAATTACGCCGTAAC
JMSF034L23+           TGTGTCCAAATCGGAAAACACCTCCGCCGCCGTAGAGTAAGAGCAGAATTACGCCGTAAC
                      ____________________________________________________________
consensus             TGTGTCCAAATCGGAAAACACCTCCGCCGCCGTAGAGTAAGAGCAGAATTACGCCGTAAC
 
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JMSF030C11+           CACCGATCACATAAACCGAATGATTAGCTACAATTCAGAATCGGAGACAGAGATTGTATA
JMSF032C21+           CACCGATCACATAAACCGAATGATTAGCTACAATTCAGAATCGGAGACAGAGATTGTATA
JMFF029C12+           CACCGATCACATAAACCGAATGATTAGCTACAATTCAGAATCGGAGACAGAGATTGTATA
JMSF034L23+           CACCGATCACATAAACCGAATGATTAGCTACAATTCAGAATCGGAGACAGAGATTGTATA
                      ____________________________________________________________
consensus             CACCGATCACATAAACCGAATGATTAGCTACAATTCAGAATCGGAGACAGAGATTGTATA
 
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JMSF030C11+           AAGGACGGTGACGTCACGGGTTCGGAAATTGAAGACGGATGAAGGCCGAGGCGCC     
JMSF032C21+           AAGGACGGTGACGTCACGGGTTCGGAAATTGAAGACGGATGAAGGCCGAGGCGCC     
JMFF029C12+           AAGGACGGTGACGTCACGGGTTCGGAAATTGAAGACGGATGAAGGCCGAGGCGCC     
JMSF034L23+           AAGGACGGTGACGTCACGGGTTCGGAAATTGAAGACGGATGAAGGCCGAGGCGCCGAGCA
                      ____________________________________________________________
consensus             AAGGACGGTGACGTCACGGGTTCGGAAATTGAAGACGGATGAAGGCCGAGGCGCCGAGCA
 
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JMSF034L23+           ATCATTGTTGTCTGCTTTGAACCATTAACTGTAAATGCTGGGGGTTAAAAACTGAATTTC
                      ____________________________________________________________
consensus             ATCATTGTTGTCTGCTTTGAACCATTAACTGTAAATGCTGGGGGTTAAAAACTGAATTTC