| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027O13 | Sequence | 583 | 006603 (10) | gb|KJB42342.1| | 4e-84 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 761 | 008243 (10) | ref|XP_011080124.1| | 4e-109 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF029J07 | Sequence | 447 | 006603 (10) | gb|KJB42342.1| | 1e-59 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 753 | 008243 (10) | ref|XP_011080124.1| | 3e-116 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF043H19 | Sequence | 642 | 006603 (10) | gb|KJB42342.1| | 7e-99 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 665 | 008243 (10) | ref|XP_011080124.1| | 4e-88 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF047I19 | Sequence | 508 | 006603 (10) | ref|XP_002301843.1| | 2e-63 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 376 | 008243 (10) | gb|KJB42341.1| | 2e-27 | hypothetical protein B456_007G150200 [Gossypium raimondii] |
| JMFF048E13 | Sequence | 467 | 006603 (10) | gb|KJB42342.1| | 6e-75 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 421 | 008243 (10) | ref|XP_011080124.1| | 5e-57 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF028N15 | Sequence | 629 | 006603 (10) | gb|KJB42342.1| | 1e-101 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 747 | 008243 (10) | ref|XP_011080124.1| | 1e-115 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF032O19 | Sequence | 669 | 006603 (10) | ref|XP_002301843.1| | 7e-107 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 696 | 008243 (10) | ref|XP_011080124.1| | 5e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF034L13 | Sequence | 661 | 006603 (10) | gb|KJB42342.1| | 1e-100 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 698 | 008243 (10) | ref|XP_011080124.1| | 7e-110 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF048M16 | Sequence | 671 | 006603 (10) | ref|XP_002301843.1| | 1e-107 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 720 | 008243 (10) | ref|XP_011080124.1| | 3e-114 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF052C22 | Sequence | 629 | 006603 (10) | gb|KJB42342.1| | 1e-101 | hypothetical protein B456_007G150200 [Gossypium raimondii] | 764 | 008243 (10) | ref|XP_011080124.1| | 8e-118 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
This contig is upended
. : . : . : . : . : . :
JMSF028N15+ GCATTCT
JMSF052C22+ CATTCT
JMSF048M16+ TTCTCTTAAAACAGCNTCTTCAGCTGTAGCTTTTGCTCTGCGCATTCT
JMSF032O19+ GCATTCT
JMSF034L13+ CT
____________________________________________________________
consensus TTCTCTTAAAACAGCNTCTTCAGCTGTAGCTTTTGCTCTGCGCATTCT
. : . : . : . : . : . :
JMSF028N15+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF052C22+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF048M16+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF032O19+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMFF043H19+ GAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF034L13+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
____________________________________________________________
consensus GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
. : . : . : . : . : . :
JMFF048E13+ AAAGCT
JMSF028N15+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF052C22+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF048M16+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF032O19+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMFF043H19+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMFF027O13+ TGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF034L13+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
____________________________________________________________
consensus GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
. : . : . : . : . : . :
JMFF048E13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF028N15+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF052C22+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF048M16+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF032O19+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF043H19+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF027O13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF047I19+ CAATAAGATTGATTACAACATTAGCTTTGNCCAC
JMSF034L13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
____________________________________________________________
consensus ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
. : . : . : . : . : . :
JMFF048E13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF028N15+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF052C22+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF048M16+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF032O19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF043H19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF027O13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF047I19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF029J07+ TTGTACTTCATTGGAACAATCTGACCCAA
JMSF034L13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
____________________________________________________________
consensus CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
. : . : . : . : . : . :
JMFF048E13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF028N15+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF052C22+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF048M16+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF032O19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF043H19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF027O13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF047I19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF029J07+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF034L13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
____________________________________________________________
consensus ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
. : . : . : . : . : . :
JMFF048E13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF028N15+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF052C22+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF048M16+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF032O19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF043H19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF027O13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF047I19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF029J07+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF034L13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
____________________________________________________________
consensus TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
. : . : . : . : . : . :
JMFF048E13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF028N15+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF052C22+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF048M16+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF032O19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGCTCCCTTCCGAACCAG
JMFF043H19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF027O13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF047I19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF029J07+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF034L13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
____________________________________________________________
consensus AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
. : . : . : . : . : . :
JMFF048E13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF028N15+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF052C22+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF048M16+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF032O19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF043H19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF027O13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF047I19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF029J07+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF034L13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
____________________________________________________________
consensus ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
. : . : . : . : . : . :
JMFF048E13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF028N15+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF052C22+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF048M16+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF032O19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF043H19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF027O13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF047I19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF029J07+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF034L13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
____________________________________________________________
consensus GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
. : . : . : . : . : . :
JMFF048E13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTC
JMSF028N15+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF052C22+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF048M16+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF032O19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF043H19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF027O13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF047I19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF029J07+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF034L13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
____________________________________________________________
consensus TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
. : . : . : . : . : . :
JMSF028N15+ CCTGCGATAATTTGGTAACAGC
JMSF052C22+ CCTGCGATAATTTGGTAACAGC
JMSF048M16+ CCTGCGATAATTTGGTAACAGC
JMSF032O19+ CCTGCGATAATTTGGTAACAGC
JMFF043H19+ CCTGCGATAATTTGGTAACAGCCAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF027O13+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF047I19+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF029J07+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMSF034L13+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGTCGATC
____________________________________________________________
consensus CCTGCGATAATTTGGTAACAGCCAGGTGTATGCTGACTGCTGAGGGGACGATAGTCGATC