Contig 006603:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O13Sequence583006603 (10)gb|KJB42342.1|4e-84hypothetical protein B456_007G150200 [Gossypium raimondii]761008243 (10)ref|XP_011080124.1|4e-109PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF029J07Sequence447006603 (10)gb|KJB42342.1|1e-59hypothetical protein B456_007G150200 [Gossypium raimondii]753008243 (10)ref|XP_011080124.1|3e-116PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF043H19Sequence642006603 (10)gb|KJB42342.1|7e-99hypothetical protein B456_007G150200 [Gossypium raimondii]665008243 (10)ref|XP_011080124.1|4e-88PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF047I19Sequence508006603 (10)ref|XP_002301843.1|2e-63hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo376008243 (10)gb|KJB42341.1|2e-27hypothetical protein B456_007G150200 [Gossypium raimondii]
JMFF048E13Sequence467006603 (10)gb|KJB42342.1|6e-75hypothetical protein B456_007G150200 [Gossypium raimondii]421008243 (10)ref|XP_011080124.1|5e-57PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF028N15Sequence629006603 (10)gb|KJB42342.1|1e-101hypothetical protein B456_007G150200 [Gossypium raimondii]747008243 (10)ref|XP_011080124.1|1e-115PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF032O19Sequence669006603 (10)ref|XP_002301843.1|7e-107hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo696008243 (10)ref|XP_011080124.1|5e-85PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF034L13Sequence661006603 (10)gb|KJB42342.1|1e-100hypothetical protein B456_007G150200 [Gossypium raimondii]698008243 (10)ref|XP_011080124.1|7e-110PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF048M16Sequence671006603 (10)ref|XP_002301843.1|1e-107hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo720008243 (10)ref|XP_011080124.1|3e-114PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF052C22Sequence629006603 (10)gb|KJB42342.1|1e-101hypothetical protein B456_007G150200 [Gossypium raimondii]764008243 (10)ref|XP_011080124.1|8e-118PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028N15+ GCATTCT
JMSF052C22+ CATTCT
JMSF048M16+ TTCTCTTAAAACAGCNTCTTCAGCTGTAGCTTTTGCTCTGCGCATTCT
JMSF032O19+ GCATTCT
JMSF034L13+ CT
                      ____________________________________________________________
consensus TTCTCTTAAAACAGCNTCTTCAGCTGTAGCTTTTGCTCTGCGCATTCT
 
. : . : . : . : . : . :
JMSF028N15+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF052C22+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF048M16+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF032O19+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMFF043H19+ GAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
JMSF034L13+ GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
                      ____________________________________________________________
consensus GGAGGGAGATGTTGGAGATGCCCCCAAACACGAAACCTGTATAAATCGCATGATTCCACC
 
. : . : . : . : . : . :
JMFF048E13+ AAAGCT
JMSF028N15+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF052C22+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF048M16+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF032O19+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMFF043H19+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMFF027O13+ TGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
JMSF034L13+ GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
                      ____________________________________________________________
consensus GTGTTCTTTTGAAATTGCTGCAAGCTGTTCAGCCATATAGTGGTTCACTTCCTCAAAGCT
 
. : . : . : . : . : . :
JMFF048E13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF028N15+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF052C22+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF048M16+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMSF032O19+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF043H19+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF027O13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
JMFF047I19+ CAATAAGATTGATTACAACATTAGCTTTGNCCAC
JMSF034L13+ ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
                      ____________________________________________________________
consensus ATAATTCCTTGTCTCATATTCCCTCCCAATAAGATTGATTACAACATTAGCCTTTGCCAC
 
. : . : . : . : . : . :
JMFF048E13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF028N15+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF052C22+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF048M16+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMSF032O19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF043H19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF027O13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF047I19+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
JMFF029J07+ TTGTACTTCATTGGAACAATCTGACCCAA
JMSF034L13+ CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
                      ____________________________________________________________
consensus CACTGCTTTAACTGAACTCTCATCTCTAGGGTTGTACTTCATTGGAACAATCTGACCCAA
 
. : . : . : . : . : . :
JMFF048E13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF028N15+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF052C22+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF048M16+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF032O19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF043H19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF027O13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF047I19+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMFF029J07+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
JMSF034L13+ ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
                      ____________________________________________________________
consensus ATCGCCCATTAACTTGAGATGACGATGACAGTCCTCAGATCCTCGGAAAGGTACCAAAAC
 
. : . : . : . : . : . :
JMFF048E13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF028N15+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF052C22+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF048M16+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF032O19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF043H19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF027O13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF047I19+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMFF029J07+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
JMSF034L13+ TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
                      ____________________________________________________________
consensus TTGAGAACCCATTTTAGCAAGCTGCTGCACAAGATACCGCCCAAGAAACCCAGTAGCACC
 
. : . : . : . : . : . :
JMFF048E13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF028N15+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF052C22+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF048M16+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF032O19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGCTCCCTTCCGAACCAG
JMFF043H19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF027O13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF047I19+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMFF029J07+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
JMSF034L13+ AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
                      ____________________________________________________________
consensus AAAAACGGTAGCAACAATTCCACTAACAGACGATCTACCGCCAGTTCCCTTCCGAACCAG
 
. : . : . : . : . : . :
JMFF048E13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF028N15+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF052C22+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF048M16+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF032O19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF043H19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF027O13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF047I19+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMFF029J07+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
JMSF034L13+ ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
                      ____________________________________________________________
consensus ATGCCCAACACCTTTAGAGGCTGTGAGCGTAGATGCATATCGCGGGGTATCAATTCCATA
 
. : . : . : . : . : . :
JMFF048E13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF028N15+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF052C22+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF048M16+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF032O19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF043H19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF027O13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF047I19+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMFF029J07+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
JMSF034L13+ GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
                      ____________________________________________________________
consensus GTGATCGGAGAGGAGATCGAAAGACTTGAAAGCTGAAACTGAATGTGAAGGTTTGAGATA
 
. : . : . : . : . : . :
JMFF048E13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTC
JMSF028N15+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF052C22+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF048M16+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF032O19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF043H19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF027O13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF047I19+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMFF029J07+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
JMSF034L13+ TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
                      ____________________________________________________________
consensus TTGGTGCCCTAATCGCCTCGTTACGGCCTGCATCGTTCCTCAATGCCAAGCGATTGCCCT
 
. : . : . : . : . : . :
JMSF028N15+ CCTGCGATAATTTGGTAACAGC
JMSF052C22+ CCTGCGATAATTTGGTAACAGC
JMSF048M16+ CCTGCGATAATTTGGTAACAGC
JMSF032O19+ CCTGCGATAATTTGGTAACAGC
JMFF043H19+ CCTGCGATAATTTGGTAACAGCCAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF027O13+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF047I19+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMFF029J07+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGT
JMSF034L13+ CCTGCGATAATTTGGTAACAG-CAGGTGTATGCTGACTGCTGAGGGGACGATAGTCGATC
                      ____________________________________________________________
consensus CCTGCGATAATTTGGTAACAGCCAGGTGTATGCTGACTGCTGAGGGGACGATAGTCGATC