Contig 006601:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P01Sequence453006601 (9)658013857 (9)
JMFF038L23Sequence136006601 (9)710013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMFF044G16Sequence614006601 (9)611013857 (9)
JMFF048J21Sequence464006601 (9)443013857 (9)
JMFF050C24Sequence603006601 (9)644013857 (9)
JMFF050I23Sequence615006601 (9)551013857 (9)
JMSF008G19Sequence319006601 (9)700013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF011J24Sequence236006601 (9)770013857 (9)ref|XP_011029902.1|98.2PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF034E18Sequence512006601 (9)770013857 (9)ref|XP_011029902.1|95.5PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF011J24+ GATATTGATCAACAGCTGACTTCAAATTCG
                      ____________________________________________________________
consensus GATATTGATCAACAGCTGACTTCAAATTCG
 
. : . : . : . : . : . :
JMSF011J24+ AGATTTTGTCGTCAAGGTGAGCAAGTTCGCAGAAACTGGAGTCGCTGTCAGTGCTACAGC
                      ____________________________________________________________
consensus AGATTTTGTCGTCAAGGTGAGCAAGTTCGCAGAAACTGGAGTCGCTGTCAGTGCTACAGC
 
. : . : . : . : . : . :
JMSF011J24+ CGGAGTCCGTCCCGGCANTTCCAGTTTCCAGGAAATNTNTCACCATAGCCGCCAAGTCAT
JMFF044G16+ CATAGCCGCCAAGTCAT
JMFF050C24+ AAGTCAT
JMFF050I23+ CATAGCCGCCAAGTCAT
                      ____________________________________________________________
consensus CGGAGTCCGTCCCGGCANTTCCAGTTTCCAGGAAATNTNTCACCATAGCCGCCAAGTCAT
 
. : . : . : . : . : . :
JMSF011J24+ TNTNGCTTTCATGGNTGAAACCATNCGCCATTTGCATTAAACCTNCAACACGTCCACCGC
JMFF044G16+ TCTCGCTTTCATGGCTGAAACCATCCGCCATCTGCATTAAACCTCCAACACGTCCACCGC
JMFF050C24+ TCTCGCTTTCATGGC-GAAACCATCCGCCATCTGCATTAACCCTCCAACACGTCCNNNGN
JMFF050I23+ TCTCGCTTTCATGGCTGAAACCATCCGCCATCTGCATTAAACCTCCAACACGTCCACCGN
                      ____________________________________________________________
consensus TCTCGCTTTCATGGCTGAAACCATCCGCCATCTGCATTAAACCTCCAACACGTCCACCGC
 
. : . : . : . : . : . :
JMSF011J24+ TTGGTCCACCACCCC
JMFF044G16+ TTGCTCCACCACCCC--TCCCCACCCTCAACCACCCGTCAACCGCCGCAGCATAAACCCT
JMFF050C24+ TTGNTCCACCACCCC--TCCCCACCCTCAACCACCCGTCAACCGCCGCAGCATAAACCCT
JMFF050I23+ TTGNTCCACCACCCCCTTCCCCACCCTCAACCACCCGTCAACCGCCGCAGCATAAACCCT
JMSF034E18+ AACCACCCGTCAACCGCCGCAGCATAAACCCT
                      ____________________________________________________________
consensus TTGGTCCACCACCCC--TCCCCACCCTCAACCACCCGTCAACCGCCGCAGCATAAACCCT
 
. : . : . : . : . : . :
JMFF044G16+ ACAGTCCATCCCAATACCAGCACCACCAATTTCCTCTATTTATTCCCCCTTTTTTTCAGT
JMFF048J21+ TCCCAATACCAGCACCACCAATTTCCTCTATTTATTCCCCCTTTTTTTCAGT
JMFF050C24+ ACAGTCCATCCCAATACCAGCACCACCAATTTCCTCTATTTATTCCCCCTTTTTTTCAGT
JMFF031P01+ CAATTTCCTTTATTTATTCCCCCTTTTTTTCAGT
JMFF050I23+ ACAGTCCATCCCAATACCAGCACCACCAATTTCCTCTATTTATTCCCCCTTTTTTTCAGT
JMSF034E18+ ACAGTCCATCCCAATACCAGCNCCNCCAATTTCCTCTATTTATTCCCCCTTTTTTTCNGN
                      ____________________________________________________________
consensus ACAGTCCATCCCAATACCAGCACCACCAATTTCCTCTATTTATTCCCCCTTTTTTTCAGT
 
. : . : . : . : . : . :
JMFF044G16+ TTTTATGTTTCATTTCATCATTTTTACTACAGAAATCCAAGCAAAAACTCGAAATTAAGA
JMFF048J21+ TTTTATGTTTCATTTCATCATTTTTACTACAGAAATCCAAGCAAAAACTCGAAATTAAGA
JMFF050C24+ TTTTATGTTTCATTTCATCATTTTTACTACAGAAATCCAAGCAAAAACTCGAAATTAAGA
JMFF031P01+ TTTTAGGNTTCATTTCNTCATTTTTNCTCCNGAAATCCNAGCAAAAACTNGAAATTAAGA
JMFF050I23+ TTTTATGTTTCATTTCATCATTTTTACTACAGAAATCCAAGCAAAAACTCGAAATTAAGA
JMSF034E18+ TTTTATGTTTCNTTTCATCNTTTTTACTACNGAAATCCNAGCAAAAACTCGAAATTAAGN
                      ____________________________________________________________
consensus TTTTATGTTTCATTTCATCATTTTTACTACAGAAATCCAAGCAAAAACTCGAAATTAAGA
 
. : . : . : . : . : . :
JMFF044G16+ TAGTATGGATTAAACAACCATAAATATCCACTAAATTCCCAATCCAAAATCCAAAACAAC
JMFF048J21+ TAGTATGGATTAAACAACCATAAATATCCACTAAATTCCCAATCCAAAATCCAAAACAAC
JMSF008G19+ ATCCAAAATCCAAAACAAC
JMFF050C24+ TAGTATGGATTAAACAACCATAAATATCCACTAAATTCCCAATCCAAAATCCAAAACAAC
JMFF031P01+ TAGTATGGATTAAACNACCATAAATATCCCCTAAATTCCCAATCCNAAATCCAAAACNAC
JMFF050I23+ TAGTATGGATTAAACAACCATAAATATCCACTAAATTCCCAATCCAAAATCCAAAACAAC
JMSF034E18+ TNGTNTGGNTTAAACNACCNTAAATATCCCCTAAATTCCCNATCCNAAATCCNAAACAAC
                      ____________________________________________________________
consensus TAGTATGGATTAAACAACCATAAATATCCACTAAATTCCCAATCCAAAATCCAAAACAAC
 
. : . : . : . : . : . :
JMFF044G16+ GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
JMFF048J21+ GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
JMSF008G19+ GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCNTCCAAAA
JMFF050C24+ GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
JMFF031P01+ GATAAATTTGCCCNGATTNTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
JMFF050I23+ GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
JMSF034E18+ GNTAAATTTGNCCNGNTTNTGGNTNTTAATCAAGCNGGTATAGCCTCAAATCNTCCAAAA
                      ____________________________________________________________
consensus GATAAATTTGACCAGATTCTGGATATTAATCAAGCAGGTATAGCCTCAAATCATCCAAAA
 
. : . : . : . : . : . :
JMFF044G16+ CTTCAGATTGTGCAGCCAAACAAGCTAAATTCTTCTCCGATTGAACAATAGTAGAAATCA
JMFF048J21+ CTTCAGATTGTGCAGCCAAACAAGCTAAATTCTTCTCCGATTGAACAATAGTAGAAATCA
JMSF008G19+ CTTCAGNTTGTGCAGCCAAACNAGNTAAATTTTTNTCCGNTTGAACNATAGTNGAAATCA
JMFF050C24+ CTTCAGATTGTGCAGCCAAACAAGCTAAATTCTTCTCCGATTGAACAATAGTAGAAATCA
JMFF031P01+ CTTCAGATTGNGCAGCCAAACAAGCTAAATTNTTNTCCGATTGNNCAATAGTAGNAATCN
JMFF050I23+ CTTCAGATTGTGCAGCCAAACAAGCTAAATTCTTCTCCGATTGAACAATAGTAGAAATCA
JMSF034E18+ CTTCAGNTTGNGCNGCCNAACNAGNTAAATTNTTNTCCGNTTGNACNATNGTNGAAATCA
                      ____________________________________________________________
consensus CTTCAGATTGTGCAGCCAAACAAGCTAAATTCTTCTCCGATTGAACAATAGTAGAAATCA
 
. : . : . : . : . : . :
JMFF044G16+ ATGGAACAATATAATCCAATTATCAGATTAACAACAACGTATAAATTCAAAAAAAAAAAT
JMFF048J21+ ATGGAACAATATAATCCAATTATCAGATTAACAACAACGTATAAATTCAAAAAAAAAAAT
JMSF008G19+ ATGGNACNATNTAATCCNATTNTCNGNTTAACNACAACGTATAAATTCAAAAAAAAAAAT
JMFF050C24+ ATGGAACAATATAATCCAATTATCAGATTAACAACAACGTATAAATTCAAAAAAAAAAAT
JMFF031P01+ ATGGNACAATATNATCCAATTATCAGANTAACAACAACGTATAAATTCAAAAAAAAAAAT
JMFF050I23+ ATGGAACAATATAATCCAATTATCAGATTAACAACAACGTATAAATTC-AAAAAAAAAAT
JMFF038L23+ AAAAAAAAAAAT
JMSF034E18+ ATGGNACNATNTAATCCNATTNTCAGNTTAACAACAACGTATAAATTCAAAAAAAAAAAT
                      ____________________________________________________________
consensus ATGGAACAATATAATCCAATTATCAGATTAACAACAACGTATAAATTCAAAAAAAAAAAT
 
. : . : . : . : . : . :
JMFF044G16+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTCTCGGGATAGAGAGGGGA
JMFF048J21+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
JMSF008G19+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
JMFF050C24+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTCTCGGGATAGAGAGGGGA
JMFF031P01+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
JMFF050I23+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTCTCGGGATAGAGAGGGGA
JMFF038L23+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
JMSF034E18+ GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
                      ____________________________________________________________
consensus GTGTCTAATAAATTGGATATAGATAGAAAATTAATTAAAATTTTCGGGATAGAGAGGGGA
 
. : . : . : . : . : . :
JMFF044G16+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGAC
JMFF048J21+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCC
JMSF008G19+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGA
JMFF050C24+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGAC
JMFF031P01+ NTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGA
JMFF050I23+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGAC
JMFF038L23+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGAC
JMSF034E18+ TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGACC
                      ____________________________________________________________
consensus TTAAAATGATCCAAAGGGATTAGATAAGGAAAAATGAGGAAAATAAAATCCCAGAGGACC