Contig 006595:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-               GTGTTGATCAAGTAAATTAAACCAAAGTTGTAGAAATCCAATACAATACAATACA
rJMSF033J20-                                                            ATACAATACA
                      ____________________________________________________________
consensus                  GTGTTGATCAAGTAAATTAAACCAAAGTTGTAGAAATCCAATACAATACAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          GAAGCACAGACAGATTGTTGGTGTCTGCTTTGTTTGTGTGTATATGTCGTCCTACTTCAC
rJMSF033J20-          GAAGCACAGACAGATTGTTGGTGTCTGCTTTGTTTGTGTGTATATGTCGTCCTACTTCAC
                      ____________________________________________________________
consensus             GAAGCACAGACAGATTGTTGGTGTCTGCTTTGTTTGTGTGTATATGTCGTCCTACTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          AACACTGATAGATATATCGCCAAATTTTTATTGGTTGTGCTTGTTGTACAACAACATGAA
rJMSF033J20-          AACACTGATAGATATATCGCCAAATTTTTATTGGTTGTGCTTGTTGTACAACAACATGAA
                      ____________________________________________________________
consensus             AACACTGATAGATATATCGCCAAATTTTTATTGGTTGTGCTTGTTGTACAACAACATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          ATATTCCCTCCATTGAAATGCAGCTTCACCAAAAGAATTGAAGATGATAAACTTGATCTC
rJMSF033J20-          ATATTCCCTCCATTGAAATGCAGCTTCACCAAAAGAATTGAAGATGATAAACTTGATCTC
                      ____________________________________________________________
consensus             ATATTCCCTCCATTGAAATGCAGCTTCACCAAAAGAATTGAAGATGATAAACTTGATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          TCTCTCTGGTTTCATCTGTATTCCTGAAAGTTAACATGTCCTGTTGCTTGTGCATGCTCT
rJMSF033J20-          TCTCTCTGGTTTCATCTGTATTCCTGAAAGTTAACATGTCCTGTTGCTTGTGCATGCTCT
                      ____________________________________________________________
consensus             TCTCTCTGGTTTCATCTGTATTCCTGAAAGTTAACATGTCCTGTTGCTTGTGCATGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          GCAGCCTCCTTCTGGCCAACAACCCCTATTTGGCAAACCCCGCACCGCAGAGTGAAGTTG
rJMSF033J20-          GCAGCCTCCTTCTGGCCAACAACCCCTATTTGGCAAACCCCGCACCGCAGAGTGAAGTTG
                      ____________________________________________________________
consensus             GCAGCCTCCTTCTGGCCAACAACCCCTATTTGGCAAACCCCGCACCGCAGAGTGAAGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          CCAGTATCTGTGTAGCTCCTCTTCCTTTGCTGCTCTTTAACCAGATTAAGAGCAAGCCCT
rJMSF033J20-          CCAGTATCTGTGTAGCTCCTCTTCCTTTGCTGCTCTTTAACCAGATTAAGAGCAAGCCCT
JMFF006J20+                                         TGCTCTTTAACCAGATTAAGAGCAAGCCCT
JMSF033J20+                                         TGCTCTTTAACCAGATTAAGAGCAAGCCCT
                      ____________________________________________________________
consensus             CCAGTATCTGTGTAGCTCCTCTTCCTTTGCTGCTCTTTAACCAGATTAAGAGCAAGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          TCAATCGGGCCAATGCCTCGGTTCTTCTGCACAGTGAAAATTGTCTGATCAAACTCCTCT
rJMSF033J20-          TCAATCGGGCCAATGCCTCGGTTCTTCTGCACAGTGAAAATTGTCTGATCAAACTCCTCT
JMFF006J20+           TCAATCGGGCCAATGCCTCGGTTCTTCTGCACAGTGAAAATTGTCTGATCAAACTCCTCT
JMSF033J20+           TCAATCGGGCCAATGCCTCGGTTCTTCTGCACAGTGAAAATTGTCTGATCAAACTCCTCT
                      ____________________________________________________________
consensus             TCAATCGGGCCAATGCCTCGGTTCTTCTGCACAGTGAAAATTGTCTGATCAAACTCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          GGAGCCCCTTCCGAAGGAGACATAGCCAAAGCATCATAATGGAGCCCATCGTAAATCAGC
rJMSF033J20-          GGAGCCCCTTCCGAAGGAGACATAGCCAAAGCATCATAATGGAGCCCATCGTAAATCAGC
JMFF006J20+           GGAGCCCCTTCCGAAGGAGACATAGCCAAAGCATCATAATGGAGCCCATCGTAAATCAGC
JMSF033J20+           GGAGCCCCTTCCGAAGGAGACATAGCCAAAGCATCATAATGGAGCCCATCGTAAATCAGC
                      ____________________________________________________________
consensus             GGAGCCCCTTCCGAAGGAGACATAGCCAAAGCATCATAATGGAGCCCATCGTAAATCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          ATGACTCGTTCATGATAGTTATTTTCCTGCCCATACAGATCACAACGTGTAGTTTGTATA
rJMSF033J20-          ATGACTCGTTCATGATAGTTATTTTCCTGCCCATACAGATCACAACGTGTAGTTTGTATA
JMFF006J20+           ATGACTCGTTCATGATAGTTATTTTCCTGCCCATACAGATCACAACGTGTAGTTTGTATA
JMSF033J20+           ATGACTCGTTCATGATAGTTATTTTCCTGCCCATACAGATCACAACGTGTAGTTTGTATA
                      ____________________________________________________________
consensus             ATGACTCGTTCATGATAGTTATTTTCCTGCCCATACAGATCACAACGTGTAGTTTGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          TCATAAGCTGCAATTTCACGCCCATAAAACTCTGCGAGTATGGAAAGCTCTATGGCACCA
rJMSF033J20-          TCATAAGCTGCAATTTCACGCCCATAAAACTCTGCGAGTATGGAAAGCTCTATGGCACCA
JMFF006J20+           TCATAAGCTGCAATTTCACGCCCATAAAACTCTGCGAGTATGGAAAGCTCTATGGCACCA
JMSF033J20+           TCATAAGCTGCAATTTCACGCCCATAAAACTCTGCGAGTATGGAAAGCTCTATGGCACCA
                      ____________________________________________________________
consensus             TCATAAGCTGCAATTTCACGCCCATAAAACTCTGCGAGTATGGAAAGCTCTATGGCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF006J20-          CCCCATTTTTCTGGGTTAAGAATCCATTCACAATATTCTTGATT                
rJMSF033J20-          CCCCATTTTTCTGGGTTAAGAATCCATTCACAATATTCTTGATTGGGCTTCCCAAGAAAA
JMFF006J20+           CCCCATTTTTCTGGGTTAAGAATCCATTCACAATATTCTTGATTGGGCTTCCCAAGAAAA
JMSF033J20+           CCCCATTTTTCTGGGTTAAGAATCCATTCACAATATTCTTGATTGGGCTTCCCAAGAAAA
                      ____________________________________________________________
consensus             CCCCATTTTTCTGGGTTAAGAATCCATTCACAATATTCTTGATTGGGCTTCCCAAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J20-          GCTTCGGAATATTTTGTAGGGTCACTGGCAACAGCTGCTGCAATAACCTGTCT       
JMFF006J20+           GCTTCGGAATATTTTGTAGGGTCACTGGCAACAGCTGCTGCAATAACCTGTCTTAGTTCA
JMSF033J20+           GCTTCGGAATATTTTGTAGGGTCACTGGCAACAGCTGCTGCAATAACCTGTCTTAGTTCA
                      ____________________________________________________________
consensus             GCTTCGGAATATTTTGTAGGGTCACTGGCAACAGCTGCTGCAATAACCTGTCTTAGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006J20+           GGAGCTTTGTTCTTGTCATGGTCCATCACATAACCAACCGCATTGAAGAGGCAACTGTTG
JMSF033J20+           GGAGCTTTGTTCTTGTCATGGTCCATCACATAACCAACCGCATTGAAGAGGCAACTGTTG
                      ____________________________________________________________
consensus             GGAGCTTTGTTCTTGTCATGGTCCATCACATAACCAACCGCATTGAAGAGGCAACTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006J20+           TCTGAAGGAATGACTCTTCTAACTATAATGCCTTCCATTGGATTTGCACCAGAGAAGCAA
JMSF033J20+           TCTGAAGGAATGACTCTTCTAACTATAATGCCTTCCATTGGATTTGCACCAGAGAAGCAA
                      ____________________________________________________________
consensus             TCTGAAGGAATGACTCTTCTAACTATAATGCCTTCCATTGGATTTGCACCAGAGAAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF006J20+           GAATTAATTGCTTTGGCTTGAA                                      
JMSF033J20+           GAATTAATTGCTTTGGCTTGAAGACAGCATATATTCGGGTGACAGACAACCCAATGGCAC
                      ____________________________________________________________
consensus             GAATTAATTGCTTTGGCTTGAAGACAGCATATATTCGGGTGACAGACAACCCAATGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033J20+           TATATATCTGTCCCTTTAACAAGACAAGATTTACCAGAACAACAACACATCCCGCTTGCC
                      ____________________________________________________________
consensus             TATATATCTGTCCCTTTAACAAGACAAGATTTACCAGAACAACAACACATCCCGCTTGCC