Contig 006590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008F17Sequence556006590 (5)ref|XP_010907452.1|1e-46PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis] re
JMFN012P12Sequence562006590 (5)ref|XP_010907452.1|2e-46PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis] re
JMFN018A20Sequence636006590 (5)ref|XP_010907452.1|2e-46PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis] re
JMSF032E16Sequence699006590 (5)ref|XP_010907452.1|8e-46PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis] re730006590 (5)ref|XP_010907452.1|1e-45PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis] re

Alignment

This contig is upended


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rJMSF032E16-                                                            ACAGCTTCCA
                      ____________________________________________________________
consensus                                                               ACAGCTTCCA
 
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JMFN018A20+                                                    AGTACTCGTTAAAATCTGA
rJMSF032E16-          CCAAAAGTAGACTTTTGGGTCCTTCCTCTTTACACTTGTTAAGTACTCGTTAAAATCTGA
JMSF032E16+                                CTTCCTCTTTACACTTGTTAAGTACTCGTTAAAATCTGA
                      ____________________________________________________________
consensus             CCAAAAGTAGACTTTTGGGTCCTTCCTCTTTACACTTGTTAAGTACTCGTTAAAATCTGA
 
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JMFN008F17+                                                           GAAGACAACAGA
JMFN018A20+           TCAATAAGATCAAAATAGAGGGAGCCAGCAACACATAAACAATCTTTAGAAGACAACAGA
JMFN012P12+                                GAGCCAGCAACACATAAACAATCTTTAGAAGACAACAGA
rJMSF032E16-          TCAATAAGATCAAAATAGAGGGAGCCAGCAACACATAAACAATCTTTAGAAGACAACAGA
JMSF032E16+           TCAATAAGATCAAAATAGAGGGAGCCAGCAACACATAAACAATCTTTAGAAGACAACAGA
                      ____________________________________________________________
consensus             TCAATAAGATCAAAATAGAGGGAGCCAGCAACACATAAACAATCTTTAGAAGACAACAGA
 
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JMFN008F17+           AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
JMFN018A20+           AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
JMFN012P12+           AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
rJMSF032E16-          AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
JMSF032E16+           AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
                      ____________________________________________________________
consensus             AAATAATTCATTACAAGAAAGCAAAGCAACAAGTTTCTCTCAAAGCCACACAAGCAGTAA
 
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JMFN008F17+           AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
JMFN018A20+           AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
JMFN012P12+           AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
rJMSF032E16-          AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
JMSF032E16+           AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
                      ____________________________________________________________
consensus             AGCACTACACTGTCTGTAACATATTGAGACATGTCTCTAAGGAACACAAACTATCATCAT
 
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JMFN008F17+           TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
JMFN018A20+           TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
JMFN012P12+           TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
rJMSF032E16-          TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
JMSF032E16+           TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
                      ____________________________________________________________
consensus             TTCTGGAGGAAATGAAGCATAATTCATATAAGTATTGGCTCAGGGCTTTCACTGGGCAAG
 
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JMFN008F17+           CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
JMFN018A20+           CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
JMFN012P12+           CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
rJMSF032E16-          CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
JMSF032E16+           CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
                      ____________________________________________________________
consensus             CACGCTTTGCTGAGATGGGTTCTCTTGTTGCTGTTGATAGTTCAGTGGCCTTCGGAAGAG
 
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JMFN008F17+           CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
JMFN018A20+           CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
JMFN012P12+           CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
rJMSF032E16-          CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
JMSF032E16+           CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
                      ____________________________________________________________
consensus             CATGATGTGTGGCTCTGGTCGATGAATAGCGTAATGAACCCATCCCCGGCTCTGCTGAAC
 
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JMFN008F17+           CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
JMFN018A20+           CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
JMFN012P12+           CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
rJMSF032E16-          CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
JMSF032E16+           CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
                      ____________________________________________________________
consensus             CCCTATAGCTCTCCATTCATTTTCGGAGAGAAGCCGATTCTTCGGAAGGAGCTTCGCCAC
 
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JMFN008F17+           TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
JMFN018A20+           TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
JMFN012P12+           TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
rJMSF032E16-          TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
JMSF032E16+           TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
                      ____________________________________________________________
consensus             TTCTGGCGGAAGTACCACATGCCTGTACTCGTAGGTATCATCGAAATACTTCTCGGAATA
 
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JMFN008F17+           CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
JMFN018A20+           CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
JMFN012P12+           CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
rJMSF032E16-          CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
JMSF032E16+           CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
                      ____________________________________________________________
consensus             CTGGATCTGACCCATTTTTTTTCACAGAGACAGCCTAACGAGCAGGGATAGCACAAACTT
 
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JMFN008F17+           GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCGAGAGAAATCGGGACCGG
JMFN018A20+           GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCGAGAGAAATCGGGACCGG
JMFN012P12+           GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCG                 
rJMSF032E16-          GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCGAGAGAAATCGGGACCGG
JMSF032E16+           GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCGAGAGAAATCGGGACCGG
                      ____________________________________________________________
consensus             GCCCTGGCGGTTCAAATTATATGGAGTTGCAGATTTCGCAGCGAGAGAAATCGGGACCGG
 
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JMFN008F17+           TGAA                                                        
JMFN018A20+           TGAAGTAGCTGATAGCC                                           
rJMSF032E16-          TGAAGTAGCTGATAGCCTGATAGTAAAGGGGGAAGGAATGACCTATTTTCTAGAATCCTC
JMSF032E16+           TGAAGTAGCTGATAGCCTGATAGTAAAGGGGGAAGGAATGACCTATTTTCTAGAATCCTC
                      ____________________________________________________________
consensus             TGAAGTAGCTGATAGCCTGATAGTAAAGGGGGAAGGAATGACCTATTTTCTAGAATCCTC