| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018L06 | Sequence | 539 | 006586 (6) | ref|XP_009622354.1| | 7e-65 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] | 780 | 006586 (6) | ref|XP_009622354.1| | 5e-64 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] |
| JMSF020M10 | Sequence | 659 | 006586 (6) | ref|XP_009622354.1| | 3e-62 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] | 732 | 006586 (6) | ref|XP_009622354.1| | 6e-62 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] |
| JMSF031N03 | Sequence | 660 | 006586 (6) | ref|XP_009622354.1| | 7e-63 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] | 696 | 006586 (6) | ref|XP_009622354.1| | 6e-62 | PREDICTED: 40S ribosomal protein S10-1-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF018L06- GATGAGAGTGCATTACCACTCAAACGATTTATCTTAGATGACGATAAAAT
____________________________________________________________
consensus GATGAGAGTGCATTACCACTCAAACGATTTATCTTAGATGACGATAAAAT
. : . : . : . : . : . :
rJMFF018L06- TAAAATCCAAAATCAAAATTGCACTAGTTCAGAGGAACACTCATTAAAAACATCATTTTC
____________________________________________________________
consensus TAAAATCCAAAATCAAAATTGCACTAGTTCAGAGGAACACTCATTAAAAACATCATTTTC
. : . : . : . : . : . :
rJMFF018L06- TGACATTGTTGATTGAACAAGGAGGGTAAATGTAGTATCCAAATGCTTCAGATTGTTTGC
____________________________________________________________
consensus TGACATTGTTGATTGAACAAGGAGGGTAAATGTAGTATCCAAATGCTTCAGATTGTTTGC
. : . : . : . : . : . :
rJMFF018L06- ATCCCCTACAACTAGGAACCCAACAAAATAAACATTTAAGAGAAGCTTGAACTTGGGGGT
JMSF020M10+ CCTACAACTAGGAACCCAACAAAATAAACATTTAAGAGAAGCTTGAACTTGGGGGT
JMSF031N03+ T
____________________________________________________________
consensus ATCCCCTACAACTAGGAACCCAACAAAATAAACATTTAAGAGAAGCTTGAACTTGGGGGT
. : . : . : . : . : . :
rJMFF018L06- GCACCGCCACCAAATCCTCCAGCACCGCGACCAAATCCAGGTCTTCCTCCCGCACCACCC
JMSF020M10+ GCACCGCCACCAAATCCTCCAGCACCGCGACCAAATCCAGGTCTTCCTCCCGCACCACCC
rJMSF020M10- CCC
rJMSF031N03- CCC
JMSF031N03+ GCACCGCCACCAAATCCTCCAGCACCGCGACCAAATCCAGGTCTTCCTCCCGCACCACCC
____________________________________________________________
consensus GCACCGCCACCAAATCCTCCAGCACCGCGACCAAATCCAGGTCTTCCTCCCGCACCACCC
. : . : . : . : . : . :
rJMFF018L06- CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
JMSF020M10+ CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
rJMSF020M10- CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
JMFF018L06+ AGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
rJMSF031N03- CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
JMSF031N03+ CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
____________________________________________________________
consensus CTGAAGGCAGGCTGGTAATCAGCAGGAGCTCCACCCTTCTCGCCTCCAAATTCACCGGGT
. : . : . : . : . : . :
rJMFF018L06- GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
JMSF020M10+ GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
rJMSF020M10- GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
JMFF018L06+ GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCTCCCCCATCACC
rJMSF031N03- GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
JMSF031N03+ GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
____________________________________________________________
consensus GGGCCTCGTGGACCTGCTCGGTATCCATCTCTGTCACCGAACCTTCTCT-CCCCATCACC
. : . : . : . : . : . :
rJMFF018L06- AAACCTGGGCGGTCCACGTGGACGGTCACTAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
JMSF020M10+ AAACCTGGGCGGTCCACGTGGACGGTCACCAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
rJMSF020M10- AAACCTGGGCGGTCCACGTGGACGGTCACCAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
JMFF018L06+ AAACCTGGGCGGTCCACGTGGACGGTCACTAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
rJMSF031N03- AAACCTGGGCGGTCCACGTGGACGGTCACCAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
JMSF031N03+ AAACCTGGGCGGTCCACGTGGACGGTCACCAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
____________________________________________________________
consensus AAACCTGGGCGGTCCACGTGGACGGTCACCAGGAGGGCCGCCCATTGGCCTGCCGAGGGG
. : . : . : . : . : . :
rJMFF018L06- CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
JMSF020M10+ CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
rJMSF020M10- CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
JMFF018L06+ CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
rJMSF031N03- CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
JMSF031N03+ CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
____________________________________________________________
consensus CTTGGCAGACTTTTTGAGAGTGTTGGGGACAATCTCAGAGGGAAGGTTAAGGTACGTCCT
. : . : . : . : . : . :
rJMFF018L06- GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
JMSF020M10+ GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
rJMSF020M10- GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
JMFF018L06+ GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
rJMSF031N03- GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
JMSF031N03+ GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
____________________________________________________________
consensus GAGGAACTCAATGCCATCGTTTGTAAGATACCAGTAATAGTGCATCCAAGCAAAAGTTTC
. : . : . : . : . : . :
rJMFF018L06- CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
JMSF020M10+ CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
rJMSF020M10- CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
JMFF018L06+ CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
rJMSF031N03- CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
JMSF031N03+ CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
____________________________________________________________
consensus CCTCACATACTCCTTCGATTTGAAGCTCTGCATAAGCTTTATCACCTGGAGATTCGGCAC
. : . : . : . : . : . :
rJMFF018L06- ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTTGGCATAGCAAACTCCCTCTTG
JMSF020M10+ ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTCGGCATAGCAAACTCCCTCTTG
rJMSF020M10- ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTCGGCATAGCAAACTCCCTCTTG
JMFF018L06+ ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTTGGCATAGCAAACTCCCTCTTG
rJMSF031N03- ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTTGGCATAGCAAACTCCCTCTTG
JMSF031N03+ ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTTGGCATAGCAAACTCCCTCTTG
____________________________________________________________
consensus ATCAATCAACGGATGCTTCGCCAAATTGTAATCCTTTTTGGCATAGCAAACTCCCTCTTG
. : . : . : . : . : . :
rJMFF018L06- GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
JMSF020M10+ GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
rJMSF020M10- GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
JMFF018L06+ GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
rJMSF031N03- GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCANAAATGATCATTGCGGCGGCGGC
JMSF031N03+ GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
____________________________________________________________
consensus GAAGAGATATTTTGAGATCTCTCTTCGGTTCTTCTCAGAAATGATCATTGCGGCGGCGGC
. : . : . : . : . : . :
rJMFF018L06- GCTGTGA
JMSF020M10+ GCTGTGAGGATTACGGAGGGATGGAAGTTTCCGGCGAGTATAGCTACTTTAGTTAACTCC
rJMSF020M10- GCTGTGAGGATTACGGAGGGATGGAAGTTTCCGGCGAGTATAGCTACTTTAGTTAACTCC
JMFF018L06+ GCTGTGAGGATTACGGAGGGATGGAAGTTTCCGGCGAGTATAGCTACTTTAGTTAACTCC
rJMSF031N03- GCTGTGAGGATTACGG
JMSF031N03+ GCTGTGAGGATTACGGAGGGATGGAAGTTTCCGGCGAGTATAGCTACTTTAGTTAACTCC
____________________________________________________________
consensus GCTGTGAGGATTACGGAGGGATGGAAGTTTCCGGCGAGTATAGCTACTTTAGTTAACTCC
. : . : . : . : . : . :
JMSF020M10+ TCT
rJMSF020M10- TCT
JMFF018L06+ TCT
JMSF031N03+ TCTGAAAACCCTAAATTGGTTGTGAACGAGGTTTATATGGGTTGGATTGGATCCGATTCC
____________________________________________________________
consensus TCTGAAAACCCTAAATTGGTTGTGAACGAGGTTTATATGGGTTGGATTGGATCCGATTCC