Contig 006581:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022N20Sequence595006581 (7)ref|XP_010940990.1|6e-78PREDICTED: ribosome production factor 1 isoform X2 [Elaeis guineensis]807006581 (7)ref|NP_001275160.1|1e-116ribosome production factor 1-like [Solanum tuberosum] gb|ABB86266.1| putative RN
JMFS099F12Sequence627006581 (7)gb|KJB09556.1|4e-39hypothetical protein B456_001G149800 [Gossypium raimondii]
JMSF031H08Sequence677006581 (7)gb|KJB09556.1|1e-36hypothetical protein B456_001G149800 [Gossypium raimondii]724006581 (7)ref|NP_001275160.1|1e-102ribosome production factor 1-like [Solanum tuberosum] gb|ABB86266.1| putative RN
JMSF041M20Sequence792006581 (7)ref|XP_011077098.1|1e-62PREDICTED: ribosome production factor 1 [Sesamum indicum]672006581 (7)ref|NP_001275160.1|2e-69ribosome production factor 1-like [Solanum tuberosum] gb|ABB86266.1| putative RN

Alignment

This contig is upended


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rJMSF031H08-                                           AATATAAGCCGCAACAAAACATGTGAG
rJMSF041M20-                                           AATATAAGCCGCAACAAAACATGTGAG
rJMFF022N20-                    TTCTCAACTTGACTGTCAATACAAATATAAGCCGCAACAAAACATGTGAG
                      ____________________________________________________________
consensus                       TTCTCAACTTGACTGTCAATACAAATATAAGCCGCAACAAAACATGTGAG
 
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rJMSF031H08-          CTGAATAAACTTACCGTAACAAGGAAAACATTAGCGACGACTTCTACATAATTATGCAAC
rJMSF041M20-          CTGAATAAACTTACCGTAACAAGGAAAACATTAGCGACGACTTCTACATAATTATGCAAC
rJMFF022N20-          CTGAATAAACTTACCGTAACAAGGAAAACATTATCGACGACTTCTACATAATTATGCAAC
                      ____________________________________________________________
consensus             CTGAATAAACTTACCGTAACAAGGAAAACATTAGCGACGACTTCTACATAATTATGCAAC
 
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rJMSF031H08-          AAGAATAAAGTCTAAAGATTGGTTTATGCCAGCTTGGGGCCAGGGTGTTGGGTGTATGAT
rJMSF041M20-          AAGAATAAAGTCTAAAGATTGGTTTATGCCAGCTTGGGGCCAGGGTGTTGGGTGTATGAT
rJMFF022N20-          AAGAATAAAGTCTAAAGATTGGTTTATGCCAGCTTGGGGCCAGGGTGTTGGGTGTATGAT
                      ____________________________________________________________
consensus             AAGAATAAAGTCTAAAGATTGGTTTATGCCAGCTTGGGGCCAGGGTGTTGGGTGTATGAT
 
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rJMSF031H08-          GATACTGAAACTCCATGGCAAAGCATCACAAGAAAAATCTCCGACGACTGGTATCCATCT
rJMSF041M20-          GATACTGAAACTCCATGGCAAAGCATCACAAGAAAAATCTCCGACGACTGGTATCCATCT
rJMFF022N20-          GATACTGAAACTCCATGGCAAAGCATCACAAGAAAAATCTCCGACGACTGGTATCCATCT
                      ____________________________________________________________
consensus             GATACTGAAACTCCATGGCAAAGCATCACAAGAAAAATCTCCGACGACTGGTATCCATCT
 
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rJMSF031H08-          CCGGCTTATGAACCCATTCATATTCCCCACCCTTTGTATCAAAGGTGCCATGCTGGAGGC
rJMSF041M20-          CCGGCTTATGAACCCATTCATATTCCCCACCCTTTGTATCAAAGGTGCCATGCTGGAGGC
rJMFF022N20-          CCGGCTTATGAACCCATTCATATTCCCCACCCTTTGTATCAAAGGTGCCATGCTGGAGGC
                      ____________________________________________________________
consensus             CCGGCTTATGAACCCATTCATATTCCCCACCCTTTGTATCAAAGGTGCCATGCTGGAGGC
 
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rJMSF031H08-          TAATTAATTTCAGCGTAAAACGTGGACCACATTCCTGAAGACGGGCAACAACTTTTTCCT
rJMSF041M20-          TAATTAATTTCAGCGTAAAACGTGGACCACATTCCTGAAGACGGGCAACAACTTTTTCCT
rJMFF022N20-          TAATTAATTTCAGCGTAAAACGTGGACCACATTCCTGAAGACGGGCAACAACTTTTTCCT
                      ____________________________________________________________
consensus             TAATTAATTTCAGCGTAAAACGTGGACCACATTCCTGAAGACGGGCAACAACTTTTTCCT
 
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rJMSF031H08-          GGGGGTTAGTCTGGTCCTCATTCTCTTTGCCTTTTTTCCCTTGTGAGTCCTGTTTGCCTT
rJMSF041M20-          GGGGGTTAGTCTGGTCCTCATTCTCTTTGCCTTTTTTCCCTTGTGAGTCCTGTTTGCCTT
rJMFF022N20-          GGGGGTTAGTCTGGTCCTCATTCTCTCTGCCTTTTTTCCCTTGTGAGTCCTGTTTGCCTT
                      ____________________________________________________________
consensus             GGGGGTTAGTCTGGTCCTCATTCTCTTTGCCTTTTTTCCCTTGTGAGTCCTGTTTGCCTT
 
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rJMSF031H08-          GCTTTGTCTCAAATATATAACGATGATGGCGGAAAAAAATAAAATCACGCTGGTTGTGAA
rJMSF041M20-          GCTTTGTCTCAAATATATAACGATGATGGCGGAAAAAAATAAAATCACGCTGGTTGTGAA
rJMFF022N20-          GCTTTGTCTCAAATATATAACGATGATGGCGGAAAAAAATAAAATCACGCTGGTTGTGAA
                      ____________________________________________________________
consensus             GCTTTGTCTCAAATATATAACGATGATGGCGGAAAAAAATAAAATCACGCTGGTTGTGAA
 
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rJMSF031H08-          ATGTTACAACTCTCCGGCCTTTGAAATTGGGATCTTGTGGAAAAAGTGCTTGAATCATCC
rJMSF041M20-          ATGTTACAACTCTCCGGCCTTTGAAATTGGGATCTTGTGGAAAAAGTGCTTGAATCATCC
rJMFF022N20-          ATGTTACAACTCTCCGGCCTTTGAAATTGGGATCTTGTGGAAAAAGTGCTTGAATCATCC
                      ____________________________________________________________
consensus             ATGTTACAACTCTCCGGCCTTTGAAATTGGGATCTTGTGGAAAAAGTGCTTGAATCATCC
 
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rJMSF031H08-          TCCCTATTCGATGCCCCAAACGCGTAGTGAAGTTGGCCAAAACTAGCTCTGGTATGTGAC
rJMSF041M20-          TCCCTATTCGATGCCCCAAACGCGTAGTGAAGTTGGCCAAAACTAGCTCTGGTATGTGAC
rJMFF022N20-          TCCCTATTCGATGCCCCAAACGCGTAGTGAAGTTGGCCAAAACTAGCTCTGGTATGTGAC
                      ____________________________________________________________
consensus             TCCCTATTCGATGCCCCAAACGCGTAGTGAAGTTGGCCAAAACTAGCTCTGGTATGTGAC
 
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rJMSF031H08-          TAGTTGGATTTCCATGATTCTTGAGATCCTTCCGTAGGACAAGTCTTGAGAGCTTAAAAT
rJMSF041M20-          TAGTTGGA-TTNCATGATTCTTGAGATCCTTCCGTAGGACANGTCTGGAGAGCTT-AAAT
rJMFF022N20-          TAGTTGGATTTCCATGATTCTTGAGATCCTTCCGTAGGACAAGTCTTGAGAGCTTAAAAT
JMFF022N20+                                                                   AAAT
                      ____________________________________________________________
consensus             TAGTTGGATTTCCATGATTCTTGAGATCCTTCCGTAGGACAAGTCTTGAGAGCTTAAAAT
 
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rJMSF031H08-          GAGCTGTAGGACCATCAGGTAGCCCTATGATGAGTAGAGCATCTGGTTCCCAACGATTAG
rJMSF041M20-          GAGCTGTAGGACCATCAGGTAGCCCTATGATGAGTAGAGCATCTGGT             
rJMFF022N20-          GAGCTGTAGGACCATCAGGTAGCCCTATGATGAGTAGAGCATCTGGTTCCCAACGATTAG
JMFF022N20+           GAGCTGTAGGACCATCAGGTAGCCCTATGATGAGTAGAGCATCTGGTTCCCAACGATTAG
JMSF041M20+                                                           CCCAACGATTAG
                      ____________________________________________________________
consensus             GAGCTGTAGGACCATCAGGTAGCCCTATGATGAGTAGAGCATCTGGTTCCCAACGATTAG
 
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rJMSF031H08-          TGTGTACNACGATAATGGAAGTAAAATCCCTTCCTTT                       
rJMFF022N20-          TGTGTACAACGATAATGGAAGTAAAATCCCTTCCTTTTGCATATTCNACAATCTTTTTTA
JMFF022N20+           TGTGTACAACGATAATGGAAGTAAAATCCCTTCCTTTTGCATATTCAACAATCTTTTTTA
JMSF041M20+           TGTGTACAACGATAATGGAAGTAAAATCCCTTCCTTTTGCATATTCAACAATCTTTTTTA
                      ____________________________________________________________
consensus             TGTGTACAACGATAATGGAAGTAAAATCCCTTCCTTTTGCATATTCAACAATCTTTTTTA
 
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rJMFF022N20-          NGTCATATGTCCCTCCCTTGTAGTAGTGAGCATTAGG                       
JMFF022N20+           GGTCATATGTCCCTCGCTTGTAGTAGTGAGCATTAGGAATAACAGAGAGCAATTCAGTAA
JMSF041M20+           GGTCATATGTCCCTCGCTTGTAGTAGTGAGCATTAGGAATAACAGAGAGCAATTCAGTAA
JMFS099F12+                                                            CAATTCAGTAA
JMSF031H08+                                                            CAATTCAGTAA
                      ____________________________________________________________
consensus             GGTCATATGTCCCTCGCTTGTAGTAGTGAGCATTAGGAATAACAGAGAGCAATTCAGTAA
 
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JMFF022N20+           TAAATGCAGGCCCCCTTGTGGATTTCAACCGGGACGTTGTGATCAAAATCTTAGGAACTT
JMSF041M20+           TAAATGCAGGCCCCCTTGTGGATTTCAACCGGGACGTTGTGATCAAAATCTTAGGAACTT
JMFS099F12+           TAAATGCAGGCCCCCTTGTGGATTTCAACCGGGACGTTGTGATCAAAATCTTAGGAACTT
JMSF031H08+           TAAATGCAGGCCCCCTTGTGGATTTCAACCGGGACGTTGTGATCAAAATCTTAGGAACTT
                      ____________________________________________________________
consensus             TAAATGCAGGCCCCCTTGTGGATTTCAACCGGGACGTTGTGATCAAAATCTTAGGAACTT
 
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JMFF022N20+           GGTCTTTCCTGAGTACAGCACTAAATTCATCCACATCATTGCTAGCAAAGAGCTCTTCAT
JMSF041M20+           GGTCTTTCCTGAGTACAGCACTAAATTCATCCACATCATTGCTAGCAAAGAGCTCTTCAT
JMFS099F12+           GGTCTTTCCTGAGTACAGCACTAAATTCATCCACATCATTGCTAGCAAAGAGCTCTTCAT
JMSF031H08+           GGTCTTTCCTGAGTACAGCACTAAATTCATCCACATCATTGCTAGCAAAGAGCTCTTCAT
                      ____________________________________________________________
consensus             GGTCTTTCCTGAGTACAGCACTAAATTCATCCACATCATTGCTAGCAAAGAGCTCTTCAT
 
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JMFF022N20+           CATCAGGTTTGCAGACAGTCTCATCAGCCTCCCTGGTATTCTCTATAGTGCGGGGGATCT
JMSF041M20+           CATCAGGTTTGCAGACAGTCTCATCAGCCTCCCTGGTATTCTCTATAGTGCGGGGGATCT
JMFS099F12+           CATCAGGTTTGCAGACAGTCTCATCAGCCTCCCTGGTATTCTCTATAGTGCGGGGGATCT
JMSF031H08+           CATCAGGTTTGCAGACAGTCTCATCAGCCTCCCTGGTATTCTCTATAGTGCGGGGGATCT
                      ____________________________________________________________
consensus             CATCAGGTTTGCAGACAGTCTCATCAGCCTCCCTGGTATTCTCTATAGTGCGGGGGATCT
 
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JMFF022N20+           TCTTAGGAGGAAGCTCTTCACCGAGCTCCAGAGCCCTTTTTTCAGCAGCTTCGCGGGCTT
JMSF041M20+           TCTTAGGAGGAAGCTCTTCACCGAGCTCCAGAGCCCTTTTTTCAGCAGCTTCGCGGGCTT
JMFS099F12+           TCTTAGGAGGAAGCTCTTCACCGAGGTCCAGAGCCCTTTTTTCAGCAGCTTCGCGGGCTT
JMSF031H08+           TCTTAGGAGGAAGCTCTTCACCGAGCTCCAGAGCCCTTTTTTCAGCAGCTTCGCGGGCTT
                      ____________________________________________________________
consensus             TCTTAGGAGGAAGCTCTTCACCGAGCTCCAGAGCCCTTTTTTCAGCAGCTTCGCGGGCTT
 
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JMFF022N20+           TAGCCTTCTTGCGCTTGTCTAGCTTCTTCTCCTGCTTGAGCTTCGCATGGACAGCAGATC
JMSF041M20+           TAGCCTTCTTGCGCTTGTCTAGCTTCTTCTCCTGCTTGAGCTTCGCATGGACAGCAGATC
JMFS099F12+           TAGCCTTCTTGCGCTTGTCTAGCTTCTTCTCCTGCTTGAGCTTCGCATGGACAGCAGATC
JMSF031H08+           TAGCCTTCTTGCGCTTGTCTAGCTTCTTCTCCTGCTTGAGCTTCGCATGGACAGCAGATC
                      ____________________________________________________________
consensus             TAGCCTTCTTGCGCTTGTCTAGCTTCTTCTCCTGCTTGAGCTTCGCATGGACAGCAGATC
 
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JMFF022N20+           TTTTTTCCTTGTTCTTTATCGAGGATGGCAGCAGAGTTTCCCTCGTGTTTTGGTTCTCTC
JMSF041M20+           TTTTTTCCTTGTTCTTTATCGAGGATGGCAGCAGAGTTTCCCTCGTGTTTTGGTTCTCTC
JMFS099F12+           TTTTTTCCTTGTTCTTTATCGAGGATGGCAGCAGAGTTTCCCTCGTGTTTTGGTTATCTC
JMSF031H08+           TTTTTTCCTTGTTCTTTATCGAGGATGGCAGCAGAGTTTCCCTCGTGTTTTGGTTCTCTC
                      ____________________________________________________________
consensus             TTTTTTCCTTGTTCTTTATCGAGGATGGCAGCAGAGTTTCCCTCGTGTTTTGGTTCTCTC
 
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JMFF022N20+           TTTTGGTATCAATGGAAGTGCTAGCTTCTCCGTCGTCCCCCTTATC              
JMSF041M20+           TTTTGGTATCAATGGAAGTGCTAGCTTCTCCGTCGTCCCCCTTATCGCCGCCATTGTTCT
JMFS099F12+           TTTTGGTATCAATGGAAGTGCTAGCTTCTCCGTCGTCCCCCTTATCGCCGCCATTGTTCT
JMSF031H08+           TTTTGGTATCAATGGAAGTGCTAGCTTCTCCGTCGTCCCCCTTATCGCCGCCATTGTTCT
                      ____________________________________________________________
consensus             TTTTGGTATCAATGGAAGTGCTAGCTTCTCCGTCGTCCCCCTTATCGCCGCCATTGTTCT
 
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JMSF041M20+           TCCTCCGTTTTTCCCCCATTGGAGTAGAGTTTAGCTAACTGCTGTGCGGGGAAAACTTAT
JMFS099F12+           TCCTCCGTTTTTCCCCCATTGGAGTAGAGTTTAGCTAACTGCTGTGCGGGGAAAACTTAT
JMSF031H08+           TCCTCCGTTTTTCCCCCATTGGAGTAGAGTTTAGCTAACTGCTGTGCGGGGAAAACTTAT
                      ____________________________________________________________
consensus             TCCTCCGTTTTTCCCCCATTGGAGTAGAGTTTAGCTAACTGCTGTGCGGGGAAAACTTAT
 
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JMSF041M20+           TAGGGATTTGAAATTGAAGGTTTGTCTACGAATCGGACCTTATCGCCTTGTCGGGCGCCG
JMFS099F12+           TAGGGATTTGAAATTGAAGGTTTGTCTACGAATCGGACCTTATCGCCTTGTCGGGCGCCG
JMSF031H08+           TAGGGATTTGAAATTGAAGGTTTGTCTACGAATCGGACCTTATCGCCTTGTCGGGCGCCG
                      ____________________________________________________________
consensus             TAGGGATTTGAAATTGAAGGTTTGTCTACGAATCGGACCTTATCGCCTTGTCGGGCGCCG
 
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JMSF041M20+           CCGTCGAGTTCGGTAATGGCGGTAGGCCGTCGCTATGAGTTTATGACTGAATGAAGAATT
JMFS099F12+           CCGTCGAGTTCGGTAATGGCGGTAGGCCGTCGCTATGAGTTTATGACTGAATGAAGAATT
JMSF031H08+           CCGTCGAGTTCGGTAATGGCGGTAGGCCGTCGCTATGAGTTTATGACTGAATGAAGAATT
                      ____________________________________________________________
consensus             CCGTCGAGTTCGGTAATGGCGGTAGGCCGTCGCTATGAGTTTATGACTGAATGAAGAATT
 
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JMSF041M20+           GAAGATGGACAAGGGAGTGAGGCAACGTCAAGGAATTATGAATTTAGGAACTAGGGTTTC
JMFS099F12+           GAAGATGGACAAGGGA                                            
JMSF031H08+           GAAGATGGACAAGGGAGTGAGGCAACGTCAAGGAATTATGAATTTAGGAACTAGGGTTTC
                      ____________________________________________________________
consensus             GAAGATGGACAAGGGAGTGAGGCAACGTCAAGGAATTATGAATTTAGGAACTAGGGTTTC