Contig 006576:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E01Sequence501006576 (4)ref|XP_011071124.1|3e-84PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum] ref|XP_011071430001040 (2)ref|XP_006367151.1|9e-32PREDICTED: high affinity nitrate transporter 2.5-like [Solanum tuberosum]
JMFF027B09Sequence577006576 (4)ref|XP_011071124.1|1e-85PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum] ref|XP_011071754001040 (2)ref|XP_006367151.1|7e-58PREDICTED: high affinity nitrate transporter 2.5-like [Solanum tuberosum]
JMFS118G02Sequence621006576 (4)ref|XP_011071124.1|9e-106PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum] ref|XP_011071
JMSF030J24Sequence245006576 (4)ref|XP_009796050.1|2e-30PREDICTED: high affinity nitrate transporter 2.5 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS118G02+                      CTGAAAAAGGGCAGGGATGAAAAATGCGATTCTCCAAGCTGTGAATTTC
                      ____________________________________________________________
consensus                        CTGAAAAAGGGCAGGGATGAAAAATGCGATTCTCCAAGCTGTGAATTTC
 
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JMFS118G02+           GTGGCGCCGATGTTTTTGATTAAGTCAAATACCAGAGGCATTATCAGTTGTGTGGCGCCG
JMFF027B09+                             ATTAAGTCAAATACCAGAGGCATTATCAGTTGTGTGGCGCCG
                      ____________________________________________________________
consensus             GTGGCGCCGATGTTTTTGATTAAGTCAAATACCAGAGGCATTATCAGTTGTGTGGCGCCG
 
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JMFS118G02+           CCGCCGAGATTTCCCCACCCGCCGGCGACTCCGTTGGCGGTGCCCACCACTTTGGCGGAG
JMFF027B09+           CCGCCGAGATTTCCCAACCCGCCGGCGACTCCGTTGGCGGTGCCCACCACTTTGGCGGAG
JMFF007E01+                                             TGGCGGTGCCCACCACTTTGGCGGAG
                      ____________________________________________________________
consensus             CCGCCGAGATTTCCCCACCCGCCGGCGACTCCGTTGGCGGTGCCCACCACTTTGGCGGAG
 
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JMFS118G02+           AACATGGAGCTCATCCAGAACTGGGTCGAGACGAAAGTGGCCAAAGAGAAGCCGGTGAAG
JMFF027B09+           AACATGGAGCTCATCCAGAACTGGGTCGAGACGAAAGTGGCCAAAGAGAAGCCGGTGAAG
JMFF007E01+           AACATGGAGCTCATCCAGAACTGGGTCGAGACGAAAGTGGCCAAAGAGAAGCCGGTGAAG
                      ____________________________________________________________
consensus             AACATGGAGCTCATCCAGAACTGGGTCGAGACGAAAGTGGCCAAAGAGAAGCCGGTGAAG
 
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JMFS118G02+           AAGCGGACGAGGAGGAACGAGACGGGGGAGTTTGCGACGGCGAAGCAGTAAACGGCCGGC
JMFF027B09+           AAGCGGACGAGGAGGAACGAGACGGGGGAGTTTGCGACGGCGAAGCAGTAAACGGCCGGC
JMFF007E01+           AAGCGGACGAGGAGGAACGAGACGGGGGAGTTTGCGACGGCGAAGCAGTAAACGGCCGGC
                      ____________________________________________________________
consensus             AAGCGGACGAGGAGGAACGAGACGGGGGAGTTTGCGACGGCGAAGCAGTAAACGGCCGGC
 
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JMFS118G02+           GCCGTGAGGAGGGTGAGGGCGGCGGAGGCGAGGCGCGGGCCGAAGAGATCACACGCGGTT
JMFF027B09+           GCCGTGAGGAGGGTGAGGGCGGCGGAGGCGAGGCGCGGGCCGAAGAGATCACACGCGGTT
JMFF007E01+           GCCGTGAGGAGGGTGAGGGCGGCGGAGGCGAGGCGCGGGCCGAAGAGATCACACGCGGTT
                      ____________________________________________________________
consensus             GCCGTGAGGAGGGTGAGGGCGGCGGAGGCGAGGCGCGGGCCGAAGAGATCACACGCGGTT
 
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JMFS118G02+           CCCATGGTGATCCGGGCGAAGACGGCGCCGGAAACCGACGCGATTCCGGCGTTGCCGATG
JMFF027B09+           CCCATGGTGATCCGGGCGAAGACGGCGCCGGAAACCGACGCGATTCCGGCGTTGCCGATG
JMFF007E01+           CCCATGGTGATCCGGGCGAAGACGGCGCCGGAAACCGACGCGATTCCGGCGTTGCCGATG
JMSF030J24+                                                                  CGATG
                      ____________________________________________________________
consensus             CCCATGGTGATCCGGGCGAAGACGGCGCCGGAAACCGACGCGATTCCGGCGTTGCCGATG
 
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JMFS118G02+           TCGGTCGCCGTGAGATCGAGGTTGTCGCGGATGATGGGGAGCAGTGGAGGGGCGGCGAAG
JMFF027B09+           TCGGTCGCCGTGAGATCGAGGTTGTCGCGGATGATGGGGAGCAGTGGAGGGGCGGCGAAG
JMFF007E01+           TCGGTCGCCGTGAGATCGAGGTTGTCGCGGATGATGGGGAGCAGTGGAGGGGCGGCGAAG
JMSF030J24+           TCGGTCGCCNTGAGATCGAGGTTGTCGCGGATGATGGGGAGCAGTGGAGGGGCGGCGAAG
                      ____________________________________________________________
consensus             TCGGTCGCCGTGAGATCGAGGTTGTCGCGGATGATGGGGAGCAGTGGAGGGGCGGCGAAG
 
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JMFS118G02+           GTGGAAACGAAACAGGCGAAGAAGGAGATCCATGAGAGGTGAAATGCTCGCATGTGCGGC
JMFF027B09+           GTGGAAACGAAACAGGCGAAGAAGGAGATCCATGAGAGGTGAAATGCTCGCATGTGCGGC
JMFF007E01+           GTGGAAACGAAACAGGCGAAGAAGGAGATCCATGAGAGGTGAAATGCTCGCATGTGCGGC
JMSF030J24+           GTGGAAACGAAACAGGCGAAGAAGGAGATCCATGAGAGNTGAAATGCTCGCATGTGCGGC
                      ____________________________________________________________
consensus             GTGGAAACGAAACAGGCGAAGAAGGAGATCCATGAGAGGTGAAATGCTCGCATGTGCGGC
 
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JMFS118G02+           GCCGCTACAGAGTACACTCGGAATTCGGTGGCCTTGTGCTCGGAGTCCACCGGAAGTGCA
JMFF027B09+           GCCGCTACAGAGTACACTCGGAATTCGGTGGCCTTGTGCTCGGAGTCCACCGGAAGTGCA
JMFF007E01+           GCCGCTACAGAGTACACTCGGAATTCGGTGGCCTTGTGCTCGGAGTCCACCGGAAGTGCA
JMSF030J24+           GCCGNTACAGAGTACACTCGGAATTCGGTGNCCTTGTNNTCGGAGTCCACCGGAAGTGCA
                      ____________________________________________________________
consensus             GCCGCTACAGAGTACACTCGGAATTCGGTGGCCTTGTGCTCGGAGTCCACCGGAAGTGCA
 
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JMFS118G02+           AATTTCCGGTCACCGGAATCCATTTCCATGCT                            
JMFF027B09+           AATTTCCGGTCACCGGAATCCATTTCCATGCTTCTTTCTATTCTCACAAATAGAC     
JMFF007E01+           AATTTCCGGTCACCGGAATCCATTTCCATGCTTCTTTCTATTCTCACAAATAGAC     
JMSF030J24+           AATTTCCGGTCACCGGAATCCATTTCCATGCTTCTTTCTATTCTCACAAATAGACGAAGC
                      ____________________________________________________________
consensus             AATTTCCGGTCACCGGAATCCATTTCCATGCTTCTTTCTATTCTCACAAATAGACGAAGC