clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF018B14 | Sequence | 493 | 006575 (4) | ref|XP_009626038.1| | 1e-33 | PREDICTED: putative receptor-like protein kinase At4g00960 [Nicotiana tomentosi | 754 | 012740 (5) | ref|XP_010089690.1| | 6e-86 | Cysteine-rich receptor-like protein kinase 10 [Morus notabilis] gb|EXB38213.1| C |
JMSF018C10 | Sequence | 249 | 006575 (4) | 738 | 012740 (5) | ref|XP_010089690.1| | 1e-87 | Cysteine-rich receptor-like protein kinase 10 [Morus notabilis] gb|EXB38213.1| C | |||
JMSF030H06 | Sequence | 618 | 006575 (4) | ref|XP_006365884.1| | 1e-39 | PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Solanum tuberosu | 740 | 012740 (5) | ref|XP_010646643.1| | 2e-77 | PREDICTED: cysteine-rich receptor-like protein kinase 10, partial [Vitis vinife |
JMSF045A13 | Sequence | 525 | 006575 (4) | emb|CAC84552.1| | 6e-34 | putative receptor-like serine-threonine protein kinase [Solanum tuberosum] | 651 | 012740 (5) | emb|CBI23554.3| | 6e-57 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF030H06+ ATCTTCATTAAACTGGTCGAT
____________________________________________________________
consensus ATCTTCATTAAACTGGTCGAT
. : . : . : . : . : . :
JMSF045A13+ TAT
JMSF018B14+ AATTCCACCGGTACACATAAGGATCCTTTGAAATGGAACCTAT
JMSF030H06+ ACTCGTGGCGTTCTCCAAATTCCACCGATACCAATAAGGATCCTTTGAAATGGAACCTAT
____________________________________________________________
consensus ACTCGTGGCGTTCTCCAAATTCCACCGGTACCCATAAGGATCCTTTGAAATGGAACCTAT
. : . : . : . : . : . :
JMSF045A13+ GATGAATCTATTGGAGTATAGTATGACGCACTCATCGTACCCTCCGAACGCCTCCTTCTG
JMSF018B14+ GATGAATCTATGGGAGTATAGTATGACGCACTCATCGTACCCTCCGAACGCCTCCTTCTG
JMSF030H06+ GATGAATCTATTGGAGTATAGTATGACGCACTCATCGTACCCTCCGAACGCCTCCTTCTG
____________________________________________________________
consensus GATGAATCTATTGGAGTATAGTATGACGCACTCATCGTACCCTCCGAACGCCTCCTTCTG
. : . : . : . : . : . :
JMSF045A13+ ATTAGGACATAATTGTGCCAACTTCTTAGCAGCATCGGTAACACAGGTACGACATGCGTC
JMSF018B14+ ATTAGGACATAATTGTGCCAACTTCTTAGCAGCATCAGTAACACAGACACGACATGTGTC
JMSF030H06+ ATTAGGACATAATTGTGCCAACTTCTTAGCGGCATCGGTAACACAGGTACGACATGCGTC
____________________________________________________________
consensus ATTAGGACATAATTGTGCCAACTTCTTAGCAGCATCGGTAACACAGGTACGACATGCGTC
. : . : . : . : . : . :
JMSF045A13+ CAGCTTAACGTCACCTCTGCACATCGCAAGCACGCTCGTCATGTCGGGACTTTGGCCTTC
JMSF018B14+ CAGCTTAACGTCACCTCTACACAGCGCAACCACGCTCGTCATGTCGGGACTTTGGCCTTC
JMSF030H06+ CAGCTTAACGTCACCTCTGCACATCGCAAGCACGCTCGTCATGTCGGGACTTTGGCCTTC
____________________________________________________________
consensus CAGCTTAACGTCACCTCTGCACATCGCAAGCACGCTCGTCATGTCGGGACTTTGGCCTTC
. : . : . : . : . : . :
JMSF045A13+ GGATGCGTTGTAGAATCCGTATTCATTAACCTCGGACGAGAGGGAGGAAAGAAGTGTGTT
JMSF018B14+ GGATGCGTTGTAGAATCCGTATTCATTAACCTCGGACGAGAGGGAGGAAAGAAGTGTGTT
JMSF018C10+ ATTCATTAACCTCGGACGAGAGGGAGGAAAGAAGTGTGTT
JMSF030H06+ GGATGCGTTGTAGAATCCGTATTCATTAACCTCGGACGAGAGGGAGGAAAGAAGTGTGTT
____________________________________________________________
consensus GGATGCGTTGTAGAATCCGTATTCATTAACCTCGGACGAGAGGGAGGAAAGAAGTGTGTT
. : . : . : . : . : . :
JMSF045A13+ AAGGTTGTTCTGGTAGGCGCTGTTTGCTGTGTAGTTTCCAGTTTTGCCGCATACTGAGAA
JMSF018B14+ AAGGTTGGTGTGGTAGGTGCTGTTTGGTGTGTAGTTTCCAGTTTTGCTGCATACTGAGAA
JMSF018C10+ AAGGTTGGTGTGGTAGGTGCTGTTTGGTGTGTAGTTTCCAGTTTTGCTGCATACTGAGAA
JMSF030H06+ AAGGTTGTTCTGGTAGGCGCTGTTTGCTGTGTAGTTTCCAGTTTTGCCGCATACTGAGAA
____________________________________________________________
consensus AAGGTTGTTGTGGTAGGTGCTGTTTGGTGTGTAGTTTCCAGTTTTGCTGCATACTGAGAA
. : . : . : . : . : . :
JMSF045A13+ TACAAGAT---CAGGCTGTGCGACTGCCGAAAGGGTGATGATGATACTAGAAAGCAGGTA
JMSF018B14+ TACAAGATCAGCAGGCTGTGCGGCTGCCGAAAGGGTGATGATGATGCTAGAAAGCAGGTA
JMSF018C10+ TACAAGATCAGCAGGCTGTGCGGCTGCCGAAAGGGTGATGATGATGCTAGAAAGCAGGTA
JMSF030H06+ TACAAGAT---CAGGCTGTGCGACTGCCGAAAGGGTGATGATGATACTAGAAAGCAGGTA
____________________________________________________________
consensus TACAAGATCAGCAGGCTGTGCGGCTGCCGAAAGGGTGATGATGATGCTAGAAAGCAGGTA
. : . : . : . : . : . :
JMSF045A13+ TAGG-AAAACCAAGCATCTCTGCAAATCCATGCCACCTAGCTTGGCTAGCTTCATGTTCA
JMSF018B14+ TAGG-AAAACCAAGCATCTCTGCAAATCAATGCCACCTAGCTT
JMSF018C10+ TAGG-AAAACCAAGCATCTCTGCAAATCCATGCCACCTAGCTT
JMSF030H06+ TAGGAAAAACCAAGCATCTCTGCAAATCCATGCCACCTAGCTTGGCTAGCTTCATGTTCA
____________________________________________________________
consensus TAGG-AAAACCAAGCATCTCTGCAAATCCATGCCACCTAGCTTGGCTAGCTTCATGTTCA
. : . : . : . : . : . :
JMSF045A13+ CACAAAATATGCCAACTCTTATTCCTATGATGAGCTTAAGTTTCAACCACAGAGCGCGAA
JMSF030H06+ CACAAAATATGCCAACTCTTATTCCTATGATGAGCTTAAGTTTCAACCACAGAGCGCGAA
____________________________________________________________
consensus CACAAAATATGCCAACTCTTATTCCTATGATGAGCTTAAGTTTCAACCACAGAGCGCGAA
. : . : . : . : . : . :
JMSF045A13+ TTATTTGTAAACATAAAACCTAGTTTTTCCTAAGAAAAATACTAT
JMSF030H06+ TTATTTGTAAACATAAAACCTAGTTTTTCCTAAGAAAAATACTATGTGTACTTCCAATCC
____________________________________________________________
consensus TTATTTGTAAACATAAAACCTAGTTTTTCCTAAGAAAAATACTATGTGTACTTCCAATCC