Contig 006573:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027J02Sequence435006573 (3)emb|CDP13951.1|1e-30unnamed protein product [Coffea canephora]397006573 (3)emb|CDP13951.1|9e-31unnamed protein product [Coffea canephora]
JMSF030G06Sequence435006573 (3)emb|CDP13951.1|1e-30unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF027J02+                                                       TTTTTTTTTTCGATCC
JMSF030G06+                                                        TTTTTTTTTTGGTCC
                      ____________________________________________________________
consensus                                                         TTTTTTTTTTTGGTCC
 
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rJMFF027J02-                                TGGTAATTAAATTTCACTCAGAAATTAAATAAAGTACT
JMFF027J02+           TCAAAACCCAACCTTATTATATTGGTAATTAAATTTCACTCAGAAATTAAATAAAGTACT
JMSF030G06+           TCAAAACCCAACCTTATTATATTGGTAATTAAATTTCACTCAGAAATTAAATAAAGTACT
                      ____________________________________________________________
consensus             TCAAAACCCAACCTTATTATATTGGTAATTAAATTTCACTCAGAAATTAAATAAAGTACT
 
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rJMFF027J02-          ACATATACATGACCTCCAATAAAATCATTTACTCTAACAGAACCAAACTAATTTATATTT
JMFF027J02+           ACATATACATGACCTCCAATAAAATCATTTACTCTAACAGAACCAAACTAATTTATATTT
JMSF030G06+           ACATATACATGACCTCCAATAAAATCATTTACTCTAACAGAACCAAACTAATTTATATTT
                      ____________________________________________________________
consensus             ACATATACATGACCTCCAATAAAATCATTTACTCTAACAGAACCAAACTAATTTATATTT
 
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rJMFF027J02-          TAAAAAAAGATTAAACATATATGTATATATGGTATGCGTTTATTCCTCTCCCCAGCTGCT
JMFF027J02+           TAAAAAAAGATTAAACATATATGTATATATGGTATGCGTTTATTCCTCTCCCCAGCTGCT
JMSF030G06+           TAAAAAAAGATTAAACATATATGTATATATGGTATGCGTTTATTCCTCTCCCCAGCTGCT
                      ____________________________________________________________
consensus             TAAAAAAAGATTAAACATATATGTATATATGGTATGCGTTTATTCCTCTCCCCAGCTGCT
 
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rJMFF027J02-          AGCTTGCTTCCCGATTTTATGAAGAGCTTTGACCACCTCTTCATTGGTCACCTTCCCAGT
JMFF027J02+           AGCTTGCTTCCCGATTTTATGAAGAGCTTTGACCACCTCTTCATTGGTCACCTTCCCAGT
JMSF030G06+           AGCTTGCTTCCCGATTTTATGAAGAGCTTTGACCACCTCTTCATTGGTCACCTTCCCAGT
                      ____________________________________________________________
consensus             AGCTTGCTTCCCGATTTTATGAAGAGCTTTGACCACCTCTTCATTGGTCACCTTCCCAGT
 
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rJMFF027J02-          GACCATCACCTTGTTTAGCTTCTTGTCAACATCGTATGTTTCAATGTCTTCAATTTTCTT
JMFF027J02+           GACCATCACCTTGTTTAGCTTCTTGTCAACATCGTATGTTTCAATGTCTTCAATTTTCTT
JMSF030G06+           GACCATCACCTTGTTTAGCTTCTTGTCAACATCGTATGTTTCAATGTCTTCAATTTTCTT
                      ____________________________________________________________
consensus             GACCATCACCTTGTTTAGCTTCTTGTCAACATCGTATGTTTCAATGTCTTCAATTTTCTT
 
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rJMFF027J02-          GATGGCTTTCAGGATTTTCCTAATGCATTCGTCGCAGTGCAAATTCACCTTCAACTCCAC
JMFF027J02+           GATGGCTTTCAGGATTTTCCTAATGCATTCGTCGCAGTGCAAATTCACCTTCAACTCCAC
JMSF030G06+           GATGGCTTTCAGGATTTTCCTAATGCATTCGTCGCAGTGCAAATTCACCTTCAACTCCAC
                      ____________________________________________________________
consensus             GATGGCTTTCAGGATTTTCCTAATGCATTCGTCGCAGTGCAAATTCACCTTCAACTCCAC
 
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rJMFF027J02-          CGTATTAGCCATGGAGCTTGAGCTAACTGGAGTTGGGAAGCAAGAATGAAAATTAG    
JMFF027J02+           CGTATTAGCCATGGAGCTTGAGCTAACTGGAGTTGGGAAGCAAGAATGAAAATTAG    
JMSF030G06+           CGTATTAGCCATGGAGCTTGAGCTAACTGGAGTTGGGAAGCAAGAATGAAAATTAGNGTC
                      ____________________________________________________________
consensus             CGTATTAGCCATGGAGCTTGAGCTAACTGGAGTTGGGAAGCAAGAATGAAAATTAGNGTC