Contig 006564:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF012A14-                                                                   AGC
                      ____________________________________________________________
consensus                                                                      AGC
 
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rJMSF028O18-              AGCAAATGCAGATTGAAGAAGCACAAGAATTTAGTTTGCAGCTAATCCTTTAAGAA
rJMSF012A14-          ATAGAGCAAATGCAGATTGAAGAAGCACAAGAATTTAGTTTGCAGCTAATCCTTTAAGAA
                      ____________________________________________________________
consensus             ATAGAGCAAATGCAGATTGAAGAAGCACAAGAATTTAGTTTGCAGCTAATCCTTTAAGAA
 
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rJMSF028O18-          TTAATTTCTAACAGGTAAAAAGACACTTCAAAACTGGAGATACTATACAAACAGAGCCTC
rJMSF012A14-          TTAATTTCTAACAGGNAAAAAGACACTTCAAAACTGGAGATACTATACAAACAGAGCCTC
                      ____________________________________________________________
consensus             TTAATTTCTAACAGGTAAAAAGACACTTCAAAACTGGAGATACTATACAAACAGAGCCTC
 
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rJMSF028O18-          TTCTCCCCTCCCTGCTGACAAATTTCTCATCCATTTGCATATCATAAGTTCACTCAGGAA
rJMSF012A14-          TTCTCCCCTCCCTGCTGACAAATTTCTCATCCATTTGCATATCANAAGTTCACTCAGGAA
                      ____________________________________________________________
consensus             TTCTCCCCTCCCTGCTGACAAATTTCTCATCCATTTGCATATCATAAGTTCACTCAGGAA
 
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rJMSF028O18-          GAAGAAAACACTTTGGTATAGTGCTAATCAACAACTCATATTCTTCCCTTCAGTAATTCC
rJMSF012A14-          GAAGAAAACACTTTGGTATAGTGCTAATCAACAACTCATATTCTTCCCTTCAGTAATTCC
                      ____________________________________________________________
consensus             GAAGAAAACACTTTGGTATAGTGCTAATCAACAACTCATATTCTTCCCTTCAGTAATTCC
 
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rJMSF028O18-          TCTAGCAATAATATCGTCTATTTAAGACACGGCCAAGAGTGGCCAATGCATCATTAAATT
rJMSF012A14-          TCTAGCAATAATATCGTCTATTTAAGACACGGCCAAGAGTGGCCAATGCATCATTAAATT
                      ____________________________________________________________
consensus             TCTAGCAATAATATCGTCTATTTAAGACACGGCCAAGAGTGGCCAATGCATCATTAAATT
 
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rJMSF028O18-          TACGAATTTTAAGCAAACCCCTGATCATGCCCTCCTCATCGTTTGAGAACTCTGCTTCCT
rJMSF012A14-          TACGAATTTTAAGCAAACCCCTGATCATGCCCTCCTCATCGTTTGAGAACTCTGCTTCCT
                      ____________________________________________________________
consensus             TACGAATTTTAAGCAAACCCCTGATCATGCCCTCCTCATCGTTTGAGAACTCTGCTTCCT
 
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rJMSF028O18-          TCATGATCATGACAATGAACTTAACTATAGCCTCCTCTCTGGCTAAAGAGAAAAGCCTTA
rJMSF012A14-          TCATGATCATGACAATGAACTTAACTATAGCCTCCTCTCTGGCTAAAGAGAAAAGCCTTA
                      ____________________________________________________________
consensus             TCATGATCATGACAATGAACTTAACTATAGCCTCCTCTCTGGCTAAAGAGAAAAGCCTTA
 
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rJMSF028O18-          CCGCCAAAATTGAGAATAAAGAGAACTCAGGTACATGTCCTTTCTTCATCATC       
rJMSF012A14-          CCGCCAAAATTGAGAATAAAGAGAACTCAGGTACATGTCCTTTCTTCATCATCTGTAAGT
                      ____________________________________________________________
consensus             CCGCCAAAATTGAGAATAAAGAGAACTCAGGTACATGTCCTTTCTTCATCATCTGTAAGT
 
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rJMSF012A14-          ATCCCAGGATTTCCAGAAATAGTGCTCATTACAACTAGATTTTATAGTACAGCTCGCACC
                      ____________________________________________________________
consensus             ATCCCAGGATTTCCAGAAATAGTGCTCATTACAACTAGATTTTATAGTACAGCTCGCACC
 
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rJMSF012A14-          AAAACAGATCAAAAAAAATTGTTATTATATTAAACAATTTAAAATATTTTTATTTTTTCT
                      ____________________________________________________________
consensus             AAAACAGATCAAAAAAAATTGTTATTATATTAAACAATTTAAAATATTTTTATTTTTTCT
 
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rJMSF012A14-          AGATACATAGAGAAATTACAGAAACACAAATTGTTAAAAACTAAATACACACAGTAAAAT
                      ____________________________________________________________
consensus             AGATACATAGAGAAATTACAGAAACACAAATTGTTAAAAACTAAATACACACAGTAAAAT
 
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rJMSF012A14-          GAAAACATCCNAGAAAAAGATTAAGCCTAGATCTGCAAAATAGGAAGGAGATTAAGATGA
JMSF028O18+                                  AGCCTAGATCTGCAAAATAGGAAGGAGATTAAGATGA
                      ____________________________________________________________
consensus             GAAAACATCCNAGAAAAAGATTAAGCCTAGATCTGCAAAATAGGAAGGAGATTAAGATGA
 
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rJMSF012A14-          CTTTCTCACTGATACCATATGATAGCCTATGATATTCTTTTCTAGAAATCANCATGCGGA
JMSF028O18+           CTTTCTCACTGATACCATATGATAGCCTATGATATTCTTTTCTAGAAATCAACATGCGGA
                      ____________________________________________________________
consensus             CTTTCTCACTGATACCATATGATAGCCTATGATATTCTTTTCTAGAAATCAACATGCGGA
 
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rJMSF012A14-          CCTTTGATTTTAGAGCAGAATTGTTAAAA                               
JMSF028O18+           CCTTTGATTTTAGAGCAGAATTGTTAAAAACTAACTACATACAGTAAAATGAACACATCC
                      ____________________________________________________________
consensus             CCTTTGATTTTAGAGCAGAATTGTTAAAAACTAACTACATACAGTAAAATGAACACATCC
 
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JMSF012A14+                                                                      C
JMFN044L19+                                                                      C
JMSF028O18+           AAGAAAAAGATTAAGACTAGATCTGCAAACTAGGAAGGAGATTAAGATGGATTTCTCACC
                      ____________________________________________________________
consensus             AAGAAAAAGATTAAGACTAGATCTGCAAACTAGGAAGGAGATTAAGATGGATTTCTCACC
 
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JMSF012A14+           GATTTAGCCAGAGGGTACAGTGAGAAGGGAGAACACTGTAGAGGATTCATCAACCTTGCC
JMFN044L19+           GATTTAGCCAGAGGGTACAGTGAGAAGGGAGAACACTGTAGAGGATTCATCAACCTTGCC
JMSF028O18+           GATTTAGCCAGAGGGTACAGTGAGAAGGGAGAACACTGTAGAGGATTCATCAACCTTGCC
                      ____________________________________________________________
consensus             GATTTAGCCAGAGGGTACAGTGAGAAGGGAGAACACTGTAGAGGATTCATCAACCTTGCC
 
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JMSF012A14+           GAGTAGATTCGAGGATGGAGATTATTNTACATTTCGCACCGACCCAACAAGAGTGTACAG
JMFN044L19+           GAGTAGATTCGAGGATGGAGATTATTCTACATTTCGCACCGACCCAACAAGAGTGTACAG
JMSF028O18+           GAGTAGATTCGAGGATGGAGATTATTCTACATTTCGCACCGACCCAACAAGAGTGTACAG
                      ____________________________________________________________
consensus             GAGTAGATTCGAGGATGGAGATTATTCTACATTTCGCACCGACCCAACAAGAGTGTACAG
 
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JMSF012A14+           CGTCCAAGTAGCTCACTAAAAGATGGGTTTATGCTCTAAAATGGAAAGCTTAAATGAACT
JMFN044L19+           CGTCCAAGTAGCTCACTAAAAGATGGGTTTATGCTCTAAAATGGAAAGCTTAAATGAACT
JMSF028O18+           CGTCCAAGTAGCTCACTAAAAGATGGGTTTATGCTCTAAAATGGAAAGCTTAAATGAACT
                      ____________________________________________________________
consensus             CGTCCAAGTAGCTCACTAAAAGATGGGTTTATGCTCTAAAATGGAAAGCTTAAATGAACT
 
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JMSF012A14+           TTCGAGAGTNAAAAATGAAGAGAGGTGAGAGGATCTGAAATACTTGTGTTACAGAGAGGA
JMFN044L19+           TTCGAGAGTGAAAAATGAAGAGAGGTGAGAGGATCTGAAATACTTGTGTTACAGAGAGGA
JMSF028O18+           TTCGAGAGTGAAAAATGAAGAGAGGTGAGAGGATCTGAAATACTTGTGTTACAGAGAGGA
                      ____________________________________________________________
consensus             TTCGAGAGTGAAAAATGAAGAGAGGTGAGAGGATCTGAAATACTTGTGTTACAGAGAGGA
 
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JMSF012A14+           AGGAAGAAATGGTGATGGATTAGGGCTTCAACTACTCATATCTGTAGTGAACTTTCTAGG
JMFN044L19+           AGGAAGAAATGGTGATGGATTAGGGCTTCAACTACTCATATCTGTAGTGAACTTTCTAGG
JMSF028O18+           AGGAAGAAATGGTGATGGATTAGGGCTTCAACTACTCATATCTGTAGTGAACTTTCTAGG
                      ____________________________________________________________
consensus             AGGAAGAAATGGTGATGGATTAGGGCTTCAACTACTCATATCTGTAGTGAACTTTCTAGG
 
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JMSF012A14+           TTGAATTTAGAGAGAGTGTGTACTTGATATTTCCGAGTAGAGTACACGAGAGNGCAGCTC
JMFN044L19+           TTGAATTTAGAGAGAGTGTGTACTTGATATTTCCGAGTAGAGTACACGAGAGTGCAGCTC
JMSF028O18+           TTGAATTTAGAGAGAGTGTGTACTTGATATTTCCGAGTAGAGTACACGAGAGTGCAGCTC
                      ____________________________________________________________
consensus             TTGAATTTAGAGAGAGTGTGTACTTGATATTTCCGAGTAGAGTACACGAGAGTGCAGCTC
 
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JMSF012A14+           AAACTTTCCAAGTAGAGTTGAACTTAGAGAGAGTTAAGAGAATATGGAAATTGAAGAGAG
JMFN044L19+           AAACTTTCCAAGTAGAGTTGAACTTAGAGAGAGTTAA                       
JMSF028O18+           AAACTTTCCAAGTAGAGTTGAACTTAGAGAGAGTTAAGAGAATATGGAAATTGAAGAGAG
                      ____________________________________________________________
consensus             AAACTTTCCAAGTAGAGTTGAACTTAGAGAGAGTTAAGAGAATATGGAAATTGAAGAGAG
 
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JMSF012A14+           AGA                                                         
JMSF028O18+           AGAGTGGGAATTCACTTTGATGGGAGGAATGAAGAAATGGTGATGGATTAGGAAATTGCC
                      ____________________________________________________________
consensus             AGAGTGGGAATTCACTTTGATGGGAGGAATGAAGAAATGGTGATGGATTAGGAAATTGCC