Contig 006561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P14Sequence645006561 (4)ref|XP_004245533.1|4e-95PREDICTED: probable GABA transporter 2 [Solanum lycopersicum]757011103 (3)gb|AHF58601.1|8e-92proline transporter 4 [Chrysanthemum lavandulifolium]
JMFS097H05Sequence616006561 (4)ref|XP_004245533.1|1e-122PREDICTED: probable GABA transporter 2 [Solanum lycopersicum]
JMSF026A12Sequence689006561 (4)emb|CDP12134.1|1e-99unnamed protein product [Coffea canephora]741011103 (3)gb|AHF58601.1|3e-99proline transporter 4 [Chrysanthemum lavandulifolium]
JMSF028G14Sequence689006561 (4)emb|CDP12134.1|1e-99unnamed protein product [Coffea canephora]762011103 (3)ref|XP_009599656.1|5e-131PREDICTED: probable GABA transporter 2 isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF031P14+                                                                   GGAC
                      ____________________________________________________________
consensus                                                                     GGAC
 
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JMFS097H05+            TTCCAGCACGAATGCAAGCACCAACTACAAGGAAAGTGTAGCCCAAACTCAGGAATAGG
JMFF031P14+           ATTCCAGCACGAATGCAAGCACCAACTACAAGGAAAGTGTAGCCCAAACTCAGGAATAGG
                      ____________________________________________________________
consensus             ATTCCAGCACGAATGCAAGCACCAACTACAAGGAAAGTGTAGCCCAAACTCAGGAATAGG
 
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JMFS097H05+           GAAACCAGGTTGATATGCCTGAGGGAGTGGAAGGATGGAAACTGCGAGAGAACTATCTGG
JMFF031P14+           GAAACCAGGTTGATATGCCTGAGGGAGTGGAAGGATGGAAACTGCGAGAGAACTATCTGG
JMSF026A12+                                         AAGGATGGAAACTGCGAGAGAACTATCTGG
JMSF028G14+                                         AAGGATGGAAACTGCGAGAGAACTATCTGG
                      ____________________________________________________________
consensus             GAAACCAGGTTGATATGCCTGAGGGAGTGGAAGGATGGAAACTGCGAGAGAACTATCTGG
 
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JMFS097H05+           ACTCCCGTTACTATTGCTATGAAGTCATACAACTTCAACGA-CCCATGGGGTGAAAGGTT
JMFF031P14+           ACTCCCGTTACTATTGCTATGAAGTCATACAACTTCAACGACCCCATGGGGTGAAAGGTT
JMSF026A12+           ACTCCCGTTACTATTGCTATGAAGTCATACAACTTCAACGA-CCCATGGGGTGAAAGGTT
JMSF028G14+           ACTCCCGTTACTATTGCTATGAAGTCATACAACTTCAACGA-CCCATGGGGTGAAAGGTT
                      ____________________________________________________________
consensus             ACTCCCGTTACTATTGCTATGAAGTCATACAACTTCAACGA-CCCATGGGGTGAAAGGTT
 
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JMFS097H05+           CGAGTACATGATCTGGATGCATTCTCCAGCAAGCAAAATTGCTCCTATGCTAATTCCAGT
JMFF031P14+           CGAGTACATGATCTGGATGCATTCTCCAGCAAGCAAAATTGCTCCTATGCTAATTCCAGT
JMSF026A12+           CGAGTACATGATCTGGATGCATTCTCCAGCAAGCAAAATTGCTCCTATGCTAATTCCAGT
JMSF028G14+           CGAGTACATGATCTGGATGCATTCTCCAGCAAGCAAAATTGCTCCTATGCTAATTCCAGT
                      ____________________________________________________________
consensus             CGAGTACATGATCTGGATGCATTCTCCAGCAAGCAAAATTGCTCCTATGCTAATTCCAGT
 
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JMFS097H05+           GTTAATGGCTGTTTGAATGAATATTACAAAATAAAACATCCATCCAGAACCTAAAACGTC
JMFF031P14+           GTTAATGGCTGTTTGAATGAATATTACAAAATAAAACATCCATCCAGAACCTAAAACGTC
JMSF026A12+           GTTAATGGCTGTTTGAATGAATATTACAAAATAAAACATCCATCCAGAACCTAAAACGTC
JMSF028G14+           GTTAATGGCTGTTTGAATGAATATTACAAAATAAAACATCCATCCAGAACCTAAAACGTC
                      ____________________________________________________________
consensus             GTTAATGGCTGTTTGAATGAATATTACAAAATAAAACATCCATCCAGAACCTAAAACGTC
 
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JMFS097H05+           GGCGGCGAGCTCGCGGAAGCGGATGTGGCGACGGCCGGACTTCTCACAGTGTTCAAGCAC
JMFF031P14+           GGCGGCGAGCTCGCGGAAGCGGATGTGGCGACGGCCGGACTTCTCACAGTGTTCAAGCAC
JMSF026A12+           GGCGGCGAGCTCGCGGAAGCGGATGTGGCGACGGCCGGACTTCTCACAGTGTTCAAGCAC
JMSF028G14+           GGCGGCGAGCTCGCGGAAGCGGATGTGGCGACGGCCGGACTTCTCACAGTGTTCAAGCAC
                      ____________________________________________________________
consensus             GGCGGCGAGCTCGCGGAAGCGGATGTGGCGACGGCCGGACTTCTCACAGTGTTCAAGCAC
 
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JMFS097H05+           CAGAGACATGAGATAGTAGGAGTAGAAGGTCACCACTCCCATGGCGGTGAGGCAGAGGAA
JMFF031P14+           CAGAGACATGAGATAGTAGGAGTAGAAGGTCACCACTCCCATGGCGGTGAGGCAGAGGAA
JMSF026A12+           CAGAGACATGAGATAGTAGGAGTAGAAGGTCACCACTCCCATGGCGGTGAGGCAGAGGAA
JMSF028G14+           CAGAGACATGAGATAGTAGGAGTAGAAGGTCACCACTCCCATGGCGGTGAGGCAGAGGAA
                      ____________________________________________________________
consensus             CAGAGACATGAGATAGTAGGAGTAGAAGGTCACCACTCCCATGGCGGTGAGGCAGAGGAA
 
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JMFS097H05+           CCCCAGGCCCCAACCCAGCCCCCGGAACGCGTAAGGCAGAGTCAGTATAGAGGGCCCCAC
JMFF031P14+           CCCCAGGCCCCAACCCAGCCCCCGGAACGCGTAAGGCAGAGTCAGTATAGAGGGCCCCAC
JMSF026A12+           CCCCAGGCCCCAACCCAGCCCCCGGAACGCGTAAGGCAGAGTCAGTATAGAGGGCCCCAC
JMSF028G14+           CCCCAGGCCCCAACCCAGCCCCCGGAACGCGTAAGGCAGAGTCAGTATAGAGGGCCCCAC
                      ____________________________________________________________
consensus             CCCCAGGCCCCAACCCAGCCCCCGGAACGCGTAAGGCAGAGTCAGTATAGAGGGCCCCAC
 
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JMFS097H05+           TATCGCCGTCGTCAGGTGAAATCCAGCGTGCCACCATTCCCCTTTGGATTCCAGCACGAA
JMFF031P14+           TATCGCCGTCGTCAGGTGAAATCCAGCGTGCCACCATTCCCCTTTGGATTCCAGCACGAA
JMSF026A12+           TATCGCCGTCGTCAGGTGAAATCCAGCGTGCCACCATTCCCCTTTGGATTCCAGCACGAA
JMSF028G14+           TATCGCCGTCGTCAGGTGAAATCCAGCGTGCCACCATTCCCCTTTGGATTCCAGCACGAA
                      ____________________________________________________________
consensus             TATCGCCGTCGTCAGGTGAAATCCAGCGTGCCACCATTCCCCTTTGGATTCCAGCACGAA
 
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JMFS097H05+           CACCGCTCCGGCGTCGTTATCACGGCGCTCTTCCAGAAACGCGTCGCTCCGAGGAGGCTC
JMFF031P14+           CACCGCTCCGGCGTCGTTATCACGGCGCTCTTCCAGAAACGCGTCGCTCCGAGGAGGCTC
JMSF026A12+           CACCGCTCCGGCGTCGTTATCACGGCGCTCTTCCAGAAACGCGTCGCTCCGAGGAGGCTC
JMSF028G14+           CACCGCTCCGGCGTCGTTATCACGGCGCTCTTCCAGAAACGCGTCGCTCCGAGGAGGCTC
                      ____________________________________________________________
consensus             CACCGCTCCGGCGTCGTTATCACGGCGCTCTTCCAGAAACGCGTCGCTCCGAGGAGGCTC
 
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JMFS097H05+           CGCCATAAACGCGCCCTG                                          
JMFF031P14+           CGCCATAAACGCGCCCTGTTGATCAGTACAAATACAAACTT                   
JMSF026A12+           CGCCATAAACGCGCCCTGTTGATCAGTACAAATACAAACTTATACGCGCTATTCGATTTC
JMSF028G14+           CGCCATAAACGCGCCCTGTTGATCAGTACAAATACAAACTTATACGCGCTATTCGATTTC
                      ____________________________________________________________
consensus             CGCCATAAACGCGCCCTGTTGATCAGTACAAATACAAACTTATACGCGCTATTCGATTTC
 
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JMSF026A12+           ACTCCGTATAAGCAGTTAAGAAGAAGAAGAAGAGTGGACGGAAAGGCGGAGGCGGATGCG
JMSF028G14+           ACTCCGTATAAGCAGTTAAGAAGAAGAAGAAGAGTGGACGGAAAGGCGGAGGCGGATGCG
                      ____________________________________________________________
consensus             ACTCCGTATAAGCAGTTAAGAAGAAGAAGAAGAGTGGACGGAAAGGCGGAGGCGGATGCG
 
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JMSF026A12+           TCGATAAGACTCTACAGAGACGTTTATTGGCAGTTATGGGAAGAAGAAGAATAGAAGA  
JMSF028G14+           TCGATAAGACTCTACAGAGACGTTTATTGGCAGTTATGGGAAGAAGAAGAATAGAAGACC
                      ____________________________________________________________
consensus             TCGATAAGACTCTACAGAGACGTTTATTGGCAGTTATGGGAAGAAGAAGAATAGAAGACC