Contig 006559:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028A17Sequence636006559 (3)gb|KJB50612.1|2e-110hypothetical protein B456_008G179300 [Gossypium raimondii] gb|KJB50613.1| hypoth
JMSF039L04Sequence676006559 (3)ref|XP_009594090.1|7e-148PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis]898006559 (3)ref|XP_002266329.1|7e-156PREDICTED: serine/threonine-protein kinase TNNI3K isoform X1 [Vitis vinifera] e

Alignment

This contig is upended


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rJMSF039L04-                                                           AGTTTTGCAAT
                      ____________________________________________________________
consensus                                                              AGTTTTGCAAT
 
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rJMSF039L04-          TTGAAGAATACCACAGTAATTACATACAGGCAACACATTTTCCAAACTTGAATGGGCTTG
                      ____________________________________________________________
consensus             TTGAAGAATACCACAGTAATTACATACAGGCAACACATTTTCCAAACTTGAATGGGCTTG
 
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rJMSF039L04-          TCTACACACAAGTAGTTCTGCACAATTGAATGTTGAACGTTCGGAGAAAGATATATTGCT
                      ____________________________________________________________
consensus             TCTACACACAAGTAGTTCTGCACAATTGAATGTTGAACGTTCGGAGAAAGATATATTGCT
 
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rJMSF039L04-          GGAAACAAAATTCATTATCTGGCGAGTTCTTAGCTCGTTGTAAAGATGCTCCAATGATGC
                      ____________________________________________________________
consensus             GGAAACAAAATTCATTATCTGGCGAGTTCTTAGCTCGTTGTAAAGATGCTCCAATGATGC
 
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rJMSF039L04-          TCTGATGGTAGAATTTCCTTGATCTTTTCAAGTCGTTTCAGAATCTCCAGGAAAGAAGGC
                      ____________________________________________________________
consensus             TCTGATGGTAGAATTTCCTTGATCTTTTCAAGTCGTTTCAGAATCTCCAGGAAAGAAGGC
 
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rJMSF039L04-          CTCTTGTTCATGTCTGCTGCCCAGCACTGCTCAACTAACTCTTTCAATTCGGGGATAAAT
                      ____________________________________________________________
consensus             CTCTTGTTCATGTCTGCTGCCCAGCACTGCTCAACTAACTCTTTCAATTCGGGGATAAAT
 
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rJMSF039L04-          CCTTTTGCCCTGAATATAGGTCTCTGTCCTTCGGCTGCATGTTTAGCTGCTTCATACGGT
                      ____________________________________________________________
consensus             CCTTTTGCCCTGAATATAGGTCTCTGTCCTTCGGCTGCATGTTTAGCTGCTTCATACGGT
 
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rJMSF039L04-          TGATGGCCTGACAATGGTGGATCCCCTTCTAGCATCTCATATAGTATCATTGCGAAGGAG
                      ____________________________________________________________
consensus             TGATGGCCTGACAATGGTGGATCCCCTTCTAGCATCTCATATAGTATCATTGCGAAGGAG
 
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rJMSF039L04-          TAAACATCAACCTTTTTGTCATATTTCCGGTGCTTGAAAACTTCAGGGGCCATATATCGA
                      ____________________________________________________________
consensus             TAAACATCAACCTTTTTGTCATATTTCCGGTGCTTGAAAACTTCAGGGGCCATATATCGA
 
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rJMSF039L04-          TAGCTTCCAGTTTCTCCTGTCATTTTATATACATCATGAGAATTTTGAACCCTAATGAGC
                      ____________________________________________________________
consensus             TAGCTTCCAGTTTCTCCTGTCATTTTATATACATCATGAGAATTTTGAACCCTAATGAGC
 
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rJMSF039L04-          TTGCTTAATCCAAAGTCTCCAACTTTCAGATGATCTGCACTGGAGTTGACGAGAAGAACA
                      ____________________________________________________________
consensus             TTGCTTAATCCAAAGTCTCCAACTTTCAGATGATCTGCACTGGAGTTGACGAGAAGAACA
 
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rJMSF039L04-          TTCCTTGGTTTTAGATCCCTGTGAATTATAACATTTGGCTCATTGTGAAGATAAGCCATG
JMSF039L04+                             CTGTGAATTATAACATTTGGCTCATTGTGAAGATAAGCCATG
                      ____________________________________________________________
consensus             TTCCTTGGTTTTAGATCCCTGTGAATTATAACATTTGGCTCATTGTGAAGATAAGCCATG
 
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rJMSF039L04-          CCTCTAGCAATGTCCATTGCCAAATTGATCGCCATCGATGGGCTGAGTGCACCTTTATCC
JMSF039L04+           CCTCTAGCAATGTCCATTGCCAAATTGATCGCCATCGATGGGCTGAGTGCACCTTTATCC
                      ____________________________________________________________
consensus             CCTCTAGCAATGTCCATTGCCAAATTGATCGCCATCGATGGGCTGAGTGCACCTTTATCC
 
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rJMSF039L04-          TTCAGATACTGATGAAGATCACCCCCCCTTAAATATTCAGTAATTAACATCAAGGGCTTT
JMSF039L04+           TTCAGATACTGATGAAGATCACCCCCCCTTAAATATTCAGTAATTAACATCAAGGGCTTT
                      ____________________________________________________________
consensus             TTCAGATACTGATGAAGATCACCCCCCCTTAAATATTCAGTAATTAACATCAAGGGCTTT
 
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rJMSF039L04-          TTGTCAGTAACTGCACCAAGAAATTGCACTATATTTGGATGTCNAAGCTTCACCAACAAA
JMSF039L04+           TTGTCAGTAACTGCACCAAGAAATTGCACTATATTTGGATGTCGAAGCTTCACCAACAAA
                      ____________________________________________________________
consensus             TTGTCAGTAACTGCACCAAGAAATTGCACTATATTTGGATGTCGAAGCTTCACCAACAAA
 
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rJMSF039L04-          TTTACCTCATGCCTGAAATCCTGAATCACCAAG                           
JMSF039L04+           TTTACCTCATGCCTGAAATCCTGAATCACCAAGCGGTCATCTGAAAGATTCGGAAGGATG
JMSF028A17+                                   ATCACCAAGCGGTCATCTGAAAGATTCGGAAGGATG
                      ____________________________________________________________
consensus             TTTACCTCATGCCTGAAATCCTGAATCACCAAGCGGTCATCTGAAAGATTCGGAAGGATG
 
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JMSF039L04+           CGTTTGATAGCAACAGGTGTTCCACGCCAAGAAGCTTTCACTATCTCACCAAAGGAGCCC
JMSF028A17+           CGTTTGATAGCAACAGGTGTTCCACGCCAAGAAGCTTTCACTATCTCACCAAAGGAGCCC
                      ____________________________________________________________
consensus             CGTTTGATAGCAACAGGTGTTCCACGCCAAGAAGCTTTCACTATCTCACCAAAGGAGCCC
 
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JMSF039L04+           TTCCCAATAATAATTGAGTTTGAGAAGTCCAATTCAGTAGGTTCAACTTCCCAGTCACAC
JMSF028A17+           TTCCCAATAATAATTGAGTTTGAGAAGTCCAATTCAGTAGGTTCAACTTCCCAGTCACAC
                      ____________________________________________________________
consensus             TTCCCAATAATAATTGAGTTTGAGAAGTCCAATTCAGTAGGTTCAACTTCCCAGTCACAC
 
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JMSF039L04+           TTATTTGGCAGAGGTGGTGGAACAGGCCTTGGTTCAAAATGACTTCCATTTTGCCCATAA
JMSF028A17+           TTATTTGGCAGAGGTGGTGGAACAGGCCTTGGTTCAAAATGACTTCCATTTTGCCCATAA
                      ____________________________________________________________
consensus             TTATTTGGCAGAGGTGGTGGAACAGGCCTTGGTTCAAAATGACTTCCATTTTGCCCATAA
 
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JMSF039L04+           GATAGACCACCATACGACTTCAATAATTCAATCATGTTGTGTTTCTTAGCTCCTTCAGCA
JMSF028A17+           GATAGACCACCATACGACTTCAATAATTCAATCATGTTGTGTTTCTTAGCTCCTTCAGCA
                      ____________________________________________________________
consensus             GATAGACCACCATACGACTTCAATAATTCAATCATGTTGTGTTTCTTAGCTCCTTCAGCA
 
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JMSF039L04+           TCAGCTAGAGGCGTATTTTTCCATCGATCTTGCGCGTTGACGTCAGCTCCGTACTCGATC
JMSF028A17+           TCAGCTAGAGGCGTATTTTTCCATCGATCTTGCGCGTTGACGTCAGCTCCGTACTCGATC
                      ____________________________________________________________
consensus             TCAGCTAGAGGCGTATTTTTCCATCGATCTTGCGCGTTGACGTCAGCTCCGTACTCGATC
 
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JMSF039L04+           AAGCACTTGGCGACATCGATCCAACCGTGGAGAGCAGCGACATGGAGCGGAGTCCGTTTA
JMSF028A17+           AAGCACTTGGCGACATCGATCCAACCGTGGAGAGCAGCGACATGGAGCGGAGTCCGTTTA
                      ____________________________________________________________
consensus             AAGCACTTGGCGACATCGATCCAACCGTGGAGAGCAGCGACATGGAGCGGAGTCCGTTTA
 
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JMSF039L04+           TCATAATCTATAGCTTGCACCAGCGTCTTATCTT                          
JMSF028A17+           TCATAATCTATAGCTTGCACCAGCGTCTTATCTTCCTCGAGGAGCTTCCTCACGGCCGAC
                      ____________________________________________________________
consensus             TCATAATCTATAGCTTGCACCAGCGTCTTATCTTCCTCGAGGAGCTTCCTCACGGCCGAC
 
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JMSF028A17+           AGGTCGTTCTGGTGGGCGTGCCACAGTATGAGCGACGTGCGGTTCACTCTGGCCTTGTCC
                      ____________________________________________________________
consensus             AGGTCGTTCTGGTGGGCGTGCCACAGTATGAGCGACGTGCGGTTCACTCTGGCCTTGTCC
 
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JMSF028A17+           TTCTTCTTCTCCGCCGTCGGCGCTTCTCCTCCGCTCCCGGTGGCGGAATGATCTGAGCCG
                      ____________________________________________________________
consensus             TTCTTCTTCTCCGCCGTCGGCGCTTCTCCTCCGCTCCCGGTGGCGGAATGATCTGAGCCG
 
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JMSF028A17+           CCTTCGCTTCCACTCATATTTCGGGTCGCGCTCGCACCGGATTCGTCTCTCTGTGGGCTT
                      ____________________________________________________________
consensus             CCTTCGCTTCCACTCATATTTCGGGTCGCGCTCGCACCGGATTCGTCTCTCTGTGGGCTT