Contig 006557:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010H04Sequence541006557 (6)ref|XP_009610617.1|1e-80PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi674006557 (6)ref|XP_009610617.1|6e-90PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi
JMFN003M20Sequence624006557 (6)ref|XP_009610617.1|3e-90PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi
JMFN033L02Sequence618006557 (6)ref|XP_009610617.1|3e-90PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi
JMSF027N11Sequence670006557 (6)ref|XP_009610617.1|5e-90PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi753006557 (6)ref|XP_009610617.1|2e-89PREDICTED: uncharacterized protein LOC104104278 isoform X1 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF027N11-                                     CCAGAGAGTATCTGAGGAGTGGTATTATGTTAA
                      ____________________________________________________________
consensus                                        CCAGAGAGTATCTGAGGAGTGGTATTATGTTAA
 
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rJMFF010H04-                                                    AACTTAGAAGTTTCAGAA
rJMSF027N11-          ATTTATGTGAAACGCAGTAATAGAGAACACAACAGAAGGCAAAACTTAGAAGTTTCAGAA
JMSF027N11+                                                             AGTTTCAGAA
                      ____________________________________________________________
consensus             ATTTATGTGAAACGCAGTAATAGAGAACACAACAGAAGGCAAAACTTAGAAGTTTCAGAA
 
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JMFN003M20+                             AGGTAGTTTCAGAAGATTCATCAACTAGTTTAAGGTGTTAAG
JMFN033L02+                       AGTTTAAGGTAGTTCAGGAAGATTCATCAACTAGTNTAAGGTGTTAAG
rJMFF010H04-          GATTCATCGACTAGTTTAAGGTAGTTTCAGAAGATTCATCAACTAGTTTAAGGTGTTAAG
rJMSF027N11-          GATTCATCGACTAGTTTAAGGTAGTTTCAGAAGATTCATCAACTAGTTTAAGGTGTTAAG
JMSF027N11+           GATTCATCGACTAGTTTAAGGTAGTTTCAGAAGATTCATCAACTAGTTTAAGGTGTTAAG
                      ____________________________________________________________
consensus             GATTCATCGACTAGTTTAAGGTAGTTTCAGAAGATTCATCAACTAGTTTAAGGTGTTAAG
 
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JMFN003M20+           TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
JMFN033L02+           TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
JMFF010H04+                                                                  ACAAT
rJMFF010H04-          TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
rJMSF027N11-          TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
JMSF027N11+           TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
                      ____________________________________________________________
consensus             TACCTAGCGACGTTTTTCCAAGAAATCCTTGGTTCTCTTCCTCATTCGTGTGAACACAAT
 
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JMFN003M20+           GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
JMFN033L02+           GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
JMFF010H04+           GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
rJMFF010H04-          GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
rJMSF027N11-          GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
JMSF027N11+           GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
                      ____________________________________________________________
consensus             GACAACGCAAGCAAGGATCCATGGAGGGATGCGTCCACCAGAAAAGTTCAACTTTTTGGC
 
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JMFN003M20+           CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
JMFN033L02+           CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
JMFF010H04+           CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
rJMFF010H04-          CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
rJMSF027N11-          CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
JMSF027N11+           CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
                      ____________________________________________________________
consensus             CCATTCAGGAGTCTCTTTCATCACCACTACAATCAATATGGTAATGGCAACAACCCCAAT
 
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JMFN003M20+           CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
JMFN033L02+           CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
JMFF010H04+           CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
rJMFF010H04-          CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
rJMSF027N11-          CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
JMSF027N11+           CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
                      ____________________________________________________________
consensus             CAATATTCTGGTAATCGGTTGGATTAACGAATCCTTGGGCTCTCCATCGACATAAATAAC
 
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JMFN003M20+           GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
JMFN033L02+           GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
JMFF010H04+           GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
rJMFF010H04-          GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
rJMSF027N11-          GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
JMSF027N11+           GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
                      ____________________________________________________________
consensus             GGATCCATGAGTGTAGGTGAGGATGGATCGGCCGTTGCGAGGGTTGAAGCGGATGGGCAC
 
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JMFN003M20+           GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
JMFN033L02+           GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
JMFF010H04+           GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
rJMFF010H04-          GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
rJMSF027N11-          GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
JMSF027N11+           GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
                      ____________________________________________________________
consensus             GCCCCGACCCGAATCAGGGTTGAAGGCGTAGATGGATTTGAAGGCATACTTGTCGAGGAT
 
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JMFN003M20+           ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
JMFN033L02+           ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
JMFF010H04+           ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
rJMFF010H04-          ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
rJMSF027N11-          ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
JMSF027N11+           ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
                      ____________________________________________________________
consensus             ATCGCGAACCTCCAGCTGATCCTGTTCCCAACCACCCAGGCTGCACTTGACCACCTCGAT
 
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JMFN003M20+           CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
JMFN033L02+           CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
JMFF010H04+           CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
rJMFF010H04-          CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
rJMSF027N11-          CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
JMSF027N11+           CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
                      ____________________________________________________________
consensus             CGGGCCCTTTCCTTGCCGGTAGAGATGAATTTCCACCTCCGGAACCTTGGCGCCCACTGT
 
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JMFN003M20+           CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
JMFN033L02+           CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
JMFF010H04+           CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
rJMFF010H04-          CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
rJMSF027N11-          CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
JMSF027N11+           CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
                      ____________________________________________________________
consensus             CGGATCCGGGTTCGATAAAAGCGGAGCCGACTCGCCGGCGGCGTTGGTCGCACGGCTCTC
 
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JMFN003M20+           TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACA                  
JMFN033L02+           TTCGATTTCTACCATATCCGTTGGACCGTT                              
JMFF010H04+           TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACAGTTAATGTATAGG     
rJMFF010H04-          TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACAGTTAATGTATAGG     
rJMSF027N11-          TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACAGTTAATGTATAGG     
JMSF027N11+           TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACAGTTAATGTATAGGTGGCC
                      ____________________________________________________________
consensus             TTCGATTTCTACCATATCCGTTGGACCGTTTCTCTCTTTACAGTTAATGTATAGGTGGCC