Contig 006556:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045C24Sequence626006556 (9)
JMSF027A11Sequence345006556 (9)222006556 (9)emb|CDP00956.1|2e-17unnamed protein product [Coffea canephora]
JMSF027M12Sequence662006556 (9)734006556 (9)ref|XP_004253378.1|1e-97PREDICTED: transcription factor bHLH93 [Solanum lycopersicum]
JMSF038J13Sequence596006556 (9)870006556 (9)ref|XP_004253378.1|3e-97PREDICTED: transcription factor bHLH93 [Solanum lycopersicum]
JMSF044M20Sequence760006556 (9)764006556 (9)ref|XP_004253378.1|1e-97PREDICTED: transcription factor bHLH93 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF044M20-                       CATTATCATAAAAAGTTTGAGTACAATCTCAGATCTCATTTGAAACT
rJMSF027M12-                                           GTACAATCTCAGATCTCATTTGAAACT
rJMSF038J13-                                           GTACAATCTCAGATCTCATTTGAAACT
                      ____________________________________________________________
consensus                          CATTATCATAAAAAGTTTGAGTACAATCTCAGATCTCATTTGAAACT
 
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rJMSF044M20-          ACCATTTTCAAAACATAATAATCTGGCCACATGATTTTTAGACCTGCTCTAATTTGTTCT
rJMSF027A11-                                                      TGCTCTAATTTGTTCT
rJMSF027M12-          ACCATTTTCAAAACATAATAATCTGGCCACATGATTTTTAGACCTGCTCTAATTTGTTCT
rJMSF038J13-          ACCATTTTCAAAACATAATAATCTGGCCACATGATTTTTAGACCTGCTCTAATTTGTTCT
                      ____________________________________________________________
consensus             ACCATTTTCAAAACATAATAATCTGGCCACATGATTTTTAGACCTGCTCTAATTTGTTCT
 
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rJMSF044M20-          CTTCGAAATTTTATCCTCTACTTAAAGAGTTAAAGACACCTTCCTCCATATCCGGCATTC
rJMSF027A11-          CGNCGAAATTTTATCCTCNACTTAAAGAGTTAAAGACACCTTCNTCNATATCCGGCATTC
rJMSF027M12-          CTTCGAAATTTTATCCTCTACTTAAAGAGTTAAAGACACCTTCCTCCATATCCGGCATTC
rJMSF038J13-          CTTCGAAATTTTATCCTCTACTTAAAGAGTTAAAGACACCTTCCTCCATATCCGGCATTC
                      ____________________________________________________________
consensus             CTTCGAAATTTTATCCTCTACTTAAAGAGTTAAAGACACCTTCCTCCATATCCGGCATTC
 
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rJMSF044M20-          CTGAATAATGCCTGTTTTATGTCTTCTGTACTCAAAACTCCCCTTTGCTCCAATTCCTGA
rJMSF027A11-          CTGAATAATGCCTGTTTTATGTCTTCTGTACTCAAAACTCCCCTTTGCTCCAATTCCTGA
rJMSF027M12-          CTGAATAATGCCTGTTTTATGTCTTCTGTACTCAAAACTCCCCTTTGCTCCAATTCCTGA
rJMSF038J13-          CTGAATAATGCCTGTTTTATGTCTTCTGTACTCAAAACTCCCCTTTGCTCCAATTCCTGA
                      ____________________________________________________________
consensus             CTGAATAATGCCTGTTTTATGTCTTCTGTACTCAAAACTCCCCTTTGCTCCAATTCCTGA
 
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rJMSF044M20-          GTGCAGGAAGCTCTGAGTGCAAAGTCATTGAAACAACTAATAACACACTGTTGAATCTCT
rJMSF027A11-          GTGCAGGAAGCTCTGAGTGCANAGTCATTGANACAACTNATAACAGACTGTTGAATCTCT
rJMSF027M12-          GTGCAGGAAGCTCTGAGTGCAAAGTCATTGAAACAACTAATAACACACTGTTGAATCTCT
rJMSF038J13-          GTGCAGGAAGCTCTGAGTGCAAAGTCATTGAAACAACTAATAACACACTGTTGAATCTCT
                      ____________________________________________________________
consensus             GTGCAGGAAGCTCTGAGTGCAAAGTCATTGAAACAACTAATAACACACTGTTGAATCTCT
 
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rJMSF044M20-          AGGCCTAAAGCCTCTAGAGTGGTCACTGTTGATAGCAGAAGCCCAGGCTTGGCTGAGCAG
rJMSF027A11-          AGGCCTAAAG                                                  
rJMSF027M12-          AGGCCTAAAGCCTCTAGAGTGGTCACTGTTGATAGCAGAAGCCCAGGCTTGGCTGAGCAG
rJMSF038J13-          AGGCCTAAAGCCTCTAGAGTGGTCACTGTTGATAGCAGAAGCCCAGGCTTGGCTGAGCAG
                      ____________________________________________________________
consensus             AGGCCTAAAGCCTCTAGAGTGGTCACTGTTGATAGCAGAAGCCCAGGCTTGGCTGAGCAG
 
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rJMSF044M20-          CAAATCTCCACCCTTGTATCACTCACTTCTCTCCTTTCCACATCAAACTTGGGTGAATTC
rJMSF027M12-          CAAATCTCCACCCTTGTATCACTCACTTCTCTCCTTTCCACATCAAACTTGGGTGAATTC
rJMSF038J13-          CAAATCTCCACCCTTGTATCACTCACTTCTCTCCTTTCCACATCAAACTTGGGTGAATTC
                      ____________________________________________________________
consensus             CAAATCTCCACCCTTGTATCACTCACTTCTCTCCTTTCCACATCAAACTTGGGTGAATTC
 
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rJMSF044M20-          CTGACAGACATTTCATCTGGTTTTACATCCTTGAAGATGCTCATTAGTCTGAGTTGATCT
rJMSF027M12-          CTGACAGACATTTCATCTGGTTTTACATCCTTGAAGATGCTCATTAGTCTGAGTTGATCT
rJMSF038J13-          CTGACAGACATTTCATCTGGTTTTACATCCTTGAAGATGCTCATTAGTCTGAGTTGATCT
                      ____________________________________________________________
consensus             CTGACAGACATTTCATCTGGTTTTACATCCTTGAAGATGCTCATTAGTCTGAGTTGATCT
 
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rJMSF044M20-          GGCCCCACCTCCATTTCTTCTTGCAGATGGTTTATTCTCTCCAGCAGCTCCTTCATGTAG
rJMSF027M12-          GGCCCCACCTCCATTTCTTCTTGCAGATGGTTTATTCTCTCCAGCAGCTCCTTCATGTAG
rJMSF038J13-          GGCCCCACCTCCATTTCTTCTTGCAGATGGTTTATTCTCTCCAGCAGCTCCTTCATGTAG
                      ____________________________________________________________
consensus             GGCCCCACCTCCATTTCTTCTTGCAGATGGTTTATTCTCTCCAGCAGCTCCTTCATGTAG
 
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rJMSF044M20-          TCTATTGTGTCCCCAAGAATGGATGTTCTATCCATCTTGCTAATCTTGGGCACAATTGAT
rJMSF027M12-          TCTATTGTGTCCCCAAGAATGGATGTTCTATCCATCTTGCTAATCTTGGGCACAATTGAT
rJMSF038J13-          TCTATTGTGTCCCCAAGAATGGATGTTCTATCCATCTTGCTAATCTTGGGCACAATTGAT
                      ____________________________________________________________
consensus             TCTATTGTGTCCCCAAGAATGGATGTTCTATCCATCTTGCTAATCTTGGGCACAATTGAT
 
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rJMSF044M20-          CTAAGCATGGAGAGCCTGTCATTAAGCCTCTTCCTTCTCCTCCTCTCAGCCATGAGGTTC
rJMSF027M12-          CTAAGCATGGAGAGCCTGTCATTAAGCCTCTTCCTTCTCCTCCTCTCAGCCATGAGGTTC
rJMSF038J13-          CTAAGCATGGAGAGCCTGTCATTAAGCCTCTTCCTTCTCCTCCTCTCAGCCATGAGGTTC
                      ____________________________________________________________
consensus             CTAAGCATGGAGAGCCTGTCATTAAGCCTCTTCCTTCTCCTCCTCTCAGCCATGAGGTTC
 
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rJMSF044M20-          TTGGAAGGTTGGCCATGGAGTTTCTTGGATTTGGGCTTCTTCTCAGGGCCAGATGACCCA
rJMSF027M12-          TTGGAAGGTTGGCCATGGAGTTTCTTGGATTTGGGCTTCTTCTCAGGGCCAGATGACCCA
rJMSF038J13-          TTGGAAGGTTGGCCATGGAGTTTCTTGGATTTGGGCTTCTTCTCAGGGCCAGATGACCCA
JMSF044M20+                               TTTCTTGGATTTGGGCTTCTTNTCAGGGCCAGATGACCCA
                      ____________________________________________________________
consensus             TTGGAAGGTTGGCCATGGAGTTTCTTGGATTTGGGCTTCTTCTCAGGGCCAGATGACCCA
 
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rJMSF044M20-          ATGTTGAAGGTCACACCAGGCTGCACAACCTCACAACCACCACCGNCGCCGCCGCCT   
rJMSF027M12-          ATGTTGAAGGTCACACCAGGCTGCACAACCTCACAACC                      
rJMSF038J13-          ATGTTGAAGGTCACACCAGGCTGCACAACCTCACAACCACCACCGCCGCCGCCGCCTCCG
JMSF044M20+           ATGTTGAAGGTCACACCAGGNTGCACAACCTCACAACCACCACCGCCGCCGCCGCCTCCG
                      ____________________________________________________________
consensus             ATGTTGAAGGTCACACCAGGCTGCACAACCTCACAACCACCACCGCCGCCGCCGCCTCCG
 
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rJMSF038J13-          CCGCCGTACTGGTAAACTGCAGGCTCCATTTTACACGAATGAGTATTATGGAAGCAATTA
JMFF045C24+                          ACTGCAGGCTCCATTTTACACGAATGAGTATTATGGAAGCAATTA
JMSF044M20+           CCGCCGTANTGGTAAACTGCAGGCTCCATTTTACACGAATGAGTATTATGGAAGCAATTA
JMSF027M12+                    TGGTAAACTGCAGGCTCCATTTTACACGAATGAGTATTATGGAAGCAATTA
                      ____________________________________________________________
consensus             CCGCCGTACTGGTAAACTGCAGGCTCCATTTTACACGAATGAGTATTATGGAAGCAATTA
 
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rJMSF038J13-          TTAGCCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGT        
JMFF045C24+           TTAGCCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGTGGTAGCTG
JMSF044M20+           TTAGCCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGTGGTAGCTG
JMSF038J13+               CCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGTGGTAGCTG
JMSF027M12+           TTAGCCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGTGGTAGCTG
                      ____________________________________________________________
consensus             TTAGCCTCCTCGTCAAAGATTCCGGCCGGCGATGACGACAAGAGCTCCTCGTGGTAGCTG
 
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JMFF045C24+           GCCGGAAATGGCGGCGGGGTGCCGAGTTTGATGTTGGACGACTCAGTGAGTTGCGGGGAA
JMSF044M20+           GCCGGAAATGGCGGCGGGGTGCCGAGTTTGATGTTGGACGACTCAGTGAGTTGCGGGGAA
JMSF038J13+           GCCGGAAATGGCGGCGGGGTGCCGAGTTTGATGTTGGACGACTCAGTGAGTTGCGGGGAA
JMSF027M12+           GCCGGAAATGGCGGCGGGGTGCCGAGTTTGATGTTGGACGACTCAGTGAGTTGCGGGGAA
                      ____________________________________________________________
consensus             GCCGGAAATGGCGGCGGGGTGCCGAGTTTGATGTTGGACGACTCAGTGAGTTGCGGGGAA
 
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JMFF045C24+           AGCTCAGTGTAGAGGTCATTGAAGAAGCAGGAAGAAGAGGAGTTGAAGCTCTGCTCAAAT
JMSF044M20+           AGCTCAGTGTAGAGGTCATTGAAGAAGCAGGAAGAAGAGGAGTTGAAGCTCTGCTCAAAT
JMSF038J13+           AGCTCAGTGTAGAGGTCATTGAAGAAGCAGGAAGAAGAGGAGTTGAAGCTCTGCTCAAAT
JMSF027M12+           AGCTCAGTGTAGAGGTCATTGAAGAAGCAGGAAGAAGAGGAGTTGAAGCTCTGCTCAAAT
                      ____________________________________________________________
consensus             AGCTCAGTGTAGAGGTCATTGAAGAAGCAGGAAGAAGAGGAGTTGAAGCTCTGCTCAAAT
 
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JMFF045C24+           GGCAGATAATTGGCGTAGCAGTCGTCAAAAGAGGCGGTGGTGGCCGTGCTGGTGGCGGTG
JMSF044M20+           GGCAGATAATTGGCGTAGCAGTCGTCAAAAGAAGCGGTGGTGGCCGTGCTGGTGGCGGTG
JMSF038J13+           GGCAGATAATTGGCGTAGCAGTCGTCAAAAGAAGCGGTGGTGGCCGTGCTGGTGGCGGTG
JMSF027M12+           GGCAGATAATTGGCGTAGCAGTCGTCAAAAGAAGCGGTGGTGGCCGTGCTGGTGGCGGTG
                      ____________________________________________________________
consensus             GGCAGATAATTGGCGTAGCAGTCGTCAAAAGAAGCGGTGGTGGCCGTGCTGGTGGCGGTG
 
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JMFF045C24+           GTCGCCGCCGTCGTGGTGGCGGCGCTGCAACATCCGCCGCCGGGAATTATTGGCACCATC
JMSF044M20+           GTCGCCGCCGTCGTGGTGGCGGCGCTGCAACACCCGCCGCCGGGAATTATTGGCACCATC
JMSF027A11+                        TGGTGGCGGCGCTGCAACACCCGCCGCCGGGAANTATTGGCACCATC
JMSF038J13+           GTCGCCGCCGTCGTGGTGGCGGCGCTGCAACACCCGCCGCCGGGAATTATTGGCACCATC
JMSF027M12+           GTCGCCGCCGTCGTGGTGGCGGCGCTGCAACACCCGCCGCCGGGAATTATTGGCACCATC
                      ____________________________________________________________
consensus             GTCGCCGCCGTCGTGGTGGCGGCGCTGCAACACCCGCCGCCGGGAATTATTGGCACCATC
 
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JMFF045C24+           ATCTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
JMSF044M20+           ATCTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
JMSF027A11+           ATGTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
JMSF038J13+           ATNTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
JMSF027M12+           ATCTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
                      ____________________________________________________________
consensus             ATCTGCTTCTCATCCTCAACACAATCAAAACCCCCATTCCCATTAACAACATTATTATTG
 
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JMFF045C24+           GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCTGTTCATTCCCATTCCC
JMSF044M20+           GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCTGTTCATTCCCATTCCC
JMSF027A11+           GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCNGTTCATTCCCATTCCC
JMSF038J13+           GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCTGTTCATTCCCATTCCC
JMSF027M12+           GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCTGTTCATTCCCATTCCC
                      ____________________________________________________________
consensus             GAATAATAATTATTGTAACAATAGAAATCATCAATATTATTCCTGTTCATTCCCATTCCC
 
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JMFF045C24+           ATTCCCACAGGAATAATATCACCTGCTTCCCATGAATCACTTCTCAAAGCTAACAATTCT
JMSF044M20+           ATTCCCACAGGAATAATATCACCTGCTTCCCATGAATCACTTCTCAAAGCTAACAATTCT
JMSF027A11+           ATTCCCACAGGAATAATATCNCNNGCTTCCCANGAATCACTTNTCAAAGCTAACAATTCT
JMSF038J13+           ATTCCCACAGGAATAATATCACCTGCTTCCCATGAATCACTTCTCAAAGCTAACAATTCT
JMSF027M12+           ATTCCCACAGGAATAATATCACCTGCTTCCCATGAATCACTTCTCAAAG-TAACAATTCT
                      ____________________________________________________________
consensus             ATTCCCACAGGAATAATATCACCTGCTTCCCATGAATCACTTCTCAAAGCTAACAATTCT
 
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JMFF045C24+           TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
JMSF044M20+           TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
JMSF027A11+           TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
JMSF038J13+           TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
JMSF027M12+           TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
                      ____________________________________________________________
consensus             TCCAAGAAACCATTCTCATAGTACTCCATCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTC
 
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JMFF045C24+           TCTCCTATGTTTTCTTTAAAAAG                                     
JMSF044M20+           TCTCCTATGTTTTCTTTAAAAAGGTTGATAAAAATGAGGTTTGATGGGAATGAGGT    
JMSF027A11+           TNTCCTATGTTTTCTTTAAAAAGGTTGATAAAAATGAGGTTTGATGGGAATGAGGT    
JMSF038J13+           TCTCCTATGTTTTCTTTAAAAAGGTTGATAAAAATGAGGTTTGATGGGAATGAGGT    
JMSF027M12+           TCTCCTATGTTTTCTTTAAAAAGGTTGATAAAAATGAGGTTTGATGGGAATGAGGTTGCC
                      ____________________________________________________________
consensus             TCTCCTATGTTTTCTTTAAAAAGGTTGATAAAAATGAGGTTTGATGGGAATGAGGTTGCC