Contig 006552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026E17Sequence607006552 (4)emb|CAN82364.1|4e-20hypothetical protein VITISV_027615 [Vitis vinifera]557006552 (4)emb|CAN82364.1|3e-20hypothetical protein VITISV_027615 [Vitis vinifera]
JMSF027E17Sequence608006552 (4)emb|CAN82364.1|4e-20hypothetical protein VITISV_027615 [Vitis vinifera]515006552 (4)emb|CAN82364.1|2e-20hypothetical protein VITISV_027615 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF027E17+                                                              GAGGCATA
rJMSF026E17+                                                              GAGGCATA
JMSF026E17-                                                               GAGGCATA
JMSF027E17-                                                               GAGGCATA
                      ____________________________________________________________
consensus                                                                 GAGGCATA
 
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rJMSF027E17+          TATGCAATTCTTCAGTACAAGTAATTGTTCACATTCTTGTCTTGTTCATACAGGTTTTGG
rJMSF026E17+          TATGCAATTCTTCAGTACAAGTAATTGTTCACATTCTTGTCTTGTTCATACAGGTTTTGG
JMSF026E17-           TATGCAATTCTTCAGTACAAGTAATTGTTCACATTCTTGTCTTGTTCATACAGGTTTTGG
JMSF027E17-           TATGCAATTCTTCAGTACAAGTAATTGTTCACATTCTTGTCTTGTTCATACAGGTTTTGG
                      ____________________________________________________________
consensus             TATGCAATTCTTCAGTACAAGTAATTGTTCACATTCTTGTCTTGTTCATACAGGTTTTGG
 
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rJMSF027E17+          AGCAGAAAATAATGGCTACGGCAGCAGCATCAGCCTCGGCTACCCTTTCACCCGCGGCGA
rJMSF026E17+          AGCAGAAAATAATGGCTACGGCAGCAGCATCAGCCTCGGCTACCCTTTCACCCGCGGCGA
JMSF026E17-           AGCAGAAAATAATGGCTACGGCAGCAGCATCAGCCTCGGCTACCCTTTCACCCGCGGCGA
JMSF027E17-           AGCAGAAAATAATGGCTACGGCAGCAGCATCAGCCTCGGCTACCCTTTCACCCGCGGCGA
                      ____________________________________________________________
consensus             AGCAGAAAATAATGGCTACGGCAGCAGCATCAGCCTCGGCTACCCTTTCACCCGCGGCGA
 
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rJMSF027E17+          TGGTTGTCGCCGCAAAGACCAACAGGTTTTCCCAGAGAAGAAGCACCAAAGTGAGGTACA
rJMSF026E17+          TGGTTGTCGCCGCAAAGACCAACAGGTTTTCCCAGAGAAGAAGCACCAAAGTGAGGTACA
JMSF026E17-           TGGTTGTCGCCGCAAAGACCAACAGGTTTTCCCAGAGAAGAAGCACCAAAGTGAGGTACA
JMSF027E17-           TGGTTGTCGCCGCAAAGACCAACAGGTTTTCCCAGAGAAGAAGCACCAAAGTGAGGTACA
                      ____________________________________________________________
consensus             TGGTTGTCGCCGCAAAGACCAACAGGTTTTCCCAGAGAAGAAGCACCAAAGTGAGGTACA
 
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rJMSF027E17+          TTAGAGGGCTGAATTCATTTGAAGGCCTCAAGGCGCATAACCATGTTGCCGCATTAGGCG
rJMSF026E17+          TTAGAGGGCTGAATTCATTTGAAGGCCTCAAGGCGCATAACCATGTTGCCGCATTAGGCG
JMSF026E17-           TTAGAGGGCTGAATTCATTTGAAGGCCTCAAGGCGCATAACCATGTTGCCGCATTAGGCG
JMSF027E17-           TTAGAGGGCTGAATTCATTTGAAGGCCTCAAGGCGCATAACCATGTTGCCGCATTAGGCG
                      ____________________________________________________________
consensus             TTAGAGGGCTGAATTCATTTGAAGGCCTCAAGGCGCATAACCATGTTGCCGCATTAGGCG
 
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rJMSF027E17+          TCCCTGTTTGCGCTGACCACTCGTTTGCAAAGATTGTAAGCTCACTGAGACCACGAGGCA
rJMSF026E17+          TCCCTGTTTGCGCTGACCACTCGTTTGCAAAGATTGTAAGCTCACTGAGACCACGAGGCA
JMSF026E17-           TCCCTGTTTGCGCTGACCACTCGTTTGCAAAGATTGTAAGCTCACTGAGACCACGAGGCA
JMSF027E17-           TCCCTGTTTGCGCTGACCACTCGTTTGCAAAGATTGTAAGCTCACTGAGACCACGAGGCA
                      ____________________________________________________________
consensus             TCCCTGTTTGCGCTGACCACTCGTTTGCAAAGATTGTAAGCTCACTGAGACCACGAGGCA
 
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rJMSF027E17+          AGGGTAATGGCGGTGGAGCTCTCTCTGCAAGCTGCAATGCCATCGCCGAGATTTTCAGGA
rJMSF026E17+          AGGGTAATGGCGGTGGAGCTCTCTCTGCAAGCTGCAATGCCATCGCCGAGATTTTCAGGA
JMSF026E17-           AGGGTAATGGCGGTGGAGCTCTCTCTGCAAGCTGCAATGCCATCGCCGAGATTTTCAGGA
JMSF027E17-           AGGGTAATGGCGGTGGAGCTCTCTCTGCAAGCTGCAATGCCATCGCCGAGATTTTCAGGA
                      ____________________________________________________________
consensus             AGGGTAATGGCGGTGGAGCTCTCTCTGCAAGCTGCAATGCCATCGCCGAGATTTTCAGGA
 
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rJMSF027E17+          TTGCTGCCATAATCCCTGGCCTTGTTCTTGTTGGAGTCGCTGTCGGTTTCGTCCTCCTCC
rJMSF026E17+          TTGCTGCCATAATCCCTGGCCTTGTTCTTGTTGGAGTCGCTGTCGGTTTCGTCCTCCTCC
JMSF026E17-           TTGCTGCCATAATCCCTGGCCTTGTTCTTGTTGGAGTCGCTGTCGGTTTCGTCCTCCTCC
JMSF027E17-           TTGCTGCCATAATCCCTGGCCTTGTTCTTGTTGGAGTCGCTGTCGGTTTCGTCCTCCTCC
                      ____________________________________________________________
consensus             TTGCTGCCATAATCCCTGGCCTTGTTCTTGTTGGAGTCGCTGTCGGTTTCGTCCTCCTCC
 
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rJMSF027E17+          GAGTTGAAGCTTACCTGGAGGAATCTGAAGAATGAAGTTATGGCAAGTCTGGTGGTTGGT
rJMSF026E17+          GAGTTGAAGCTTACCTGGAGGAATCTGAAGAATGAAGTTATGGCAAGTCTGGTGGTTGGT
JMSF026E17-           GAGTTGAAGCTTACCTGGAGGAATCTGAAGAATGAAGTTATGGCAAGTCTGGTGGTTGGT
JMSF027E17-           GAGTTGAAGCTTACCTGGAGGAATCTGAAGAATGAAGTTATGGCAAGTCTGGTGGTTGGT
                      ____________________________________________________________
consensus             GAGTTGAAGCTTACCTGGAGGAATCTGAAGAATGAAGTTATGGCAAGTCTGGTGGTTGGT
 
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rJMSF027E17+          TCAGAGTTCTTTTTCAATAATCAAGGT                                 
rJMSF026E17+          TCAGAGTTCTTTTTCAATAATCAAGGTCAATGTGCTTTTGAATTGGTTCCATGTTTTGTC
JMSF026E17-           TCAGAGTTCTTTTTCAATAATCAAGGTCAATGTGCTTTTGAATTGGTTCCATGTTTTGTC
JMSF027E17-           TCAGAGTTCTTTTTCAATAATCAAGGTCAATGTGCTTTTGAATTGGTTCCATGTTTTGTC
                      ____________________________________________________________
consensus             TCAGAGTTCTTTTTCAATAATCAAGGTCAATGTGCTTTTGAATTGGTTCCATGTTTTGTC
 
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rJMSF026E17+          TTGTATATT                                                   
JMSF026E17-           TTGTATATTTGTTCTGTTGGGGCAACATATATATAACTAAGATATCTTTGCCTCTCTTT 
JMSF027E17-           TTGTATATTTGTTCTGTTGGGGCAACATATATATAACTAAGATATCTTTGCCTCTCTTTC
                      ____________________________________________________________
consensus             TTGTATATTTGTTCTGTTGGGGCAACATATATATAACTAAGATATCTTTGCCTCTCTTTC