Contig 006546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026A16Sequence612006546 (2)ref|XP_009592548.1|5e-25PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform750008611 (2)ref|XP_010313102.1|4e-132PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Solanum lycopersi
JMSF040C19Sequence719006546 (2)ref|XP_009592548.1|7e-26PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform824008611 (2)ref|XP_004250766.1|5e-145PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X1 [Solanum lycopersi

Alignment

This contig is upended


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JMSF040C19+ TAACAGAATCTTTGAAGCAGAAAGGGTTT
                      ____________________________________________________________
consensus TAACAGAATCTTTGAAGCAGAAAGGGTTT
 
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JMSF040C19+ GTGTGATAGATTTAGTATCAGACTCCTTATTTTGAATGTGAAGCTGCCTAACATCATTTT
                      ____________________________________________________________
consensus GTGTGATAGATTTAGTATCAGACTCCTTATTTTGAATGTGAAGCTGCCTAACATCATTTT
 
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JMSF040C19+ CATTAGCTGTATCGGAGGAATCCTTGACCATCCTTCTCCTGAGTTTTTGCAGCAAAACTT
JMSF026A16+ TGCAGCAAAACTT
                      ____________________________________________________________
consensus CATTAGCTGTATCGGAGGAATCCTTGACCATCCTTCTCCTGAGTTTTTGCAGCAAAACTT
 
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JMSF040C19+ CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
JMSF026A16+ CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
                      ____________________________________________________________
consensus CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
 
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JMSF040C19+ CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
JMSF026A16+ CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
                      ____________________________________________________________
consensus CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
 
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JMSF040C19+ GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
JMSF026A16+ GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
                      ____________________________________________________________
consensus GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
 
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JMSF040C19+ ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
JMSF026A16+ ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
                      ____________________________________________________________
consensus ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
 
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JMSF040C19+ TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
JMSF026A16+ TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
                      ____________________________________________________________
consensus TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
 
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JMSF040C19+ CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
JMSF026A16+ CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
                      ____________________________________________________________
consensus CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
 
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JMSF040C19+ TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
JMSF026A16+ TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
                      ____________________________________________________________
consensus TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
 
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JMSF040C19+ CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
JMSF026A16+ CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
                      ____________________________________________________________
consensus CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
 
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JMSF040C19+ TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCTCCGAAATGTGAAAGTATTTACTA
JMSF026A16+ TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCT-CGAAATGTGAAAGTATTTACTA
                      ____________________________________________________________
consensus TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCTCCGAAATGTGAAAGTATTTACTA
 
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JMSF040C19+ CATATGGTGGCGGAGCCACCGCGGCAGCC
JMSF026A16+ CATATGGTGGCGGAGCCACCGCGGCAGCCACCGCTGCGGCCTCGGCAAGCATCATCGTCC
                      ____________________________________________________________
consensus CATATGGTGGCGGAGCCACCGCGGCAGCCACCGCTGCGGCCTCGGCAAGCATCATCGTCC