Contig 006546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026A16Sequence612006546 (2)ref|XP_009592548.1|5e-25PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform750008611 (2)ref|XP_010313102.1|4e-132PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Solanum lycopersi
JMSF040C19Sequence719006546 (2)ref|XP_009592548.1|7e-26PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Nicotiana tomentosiform824008611 (2)ref|XP_004250766.1|5e-145PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X1 [Solanum lycopersi

Alignment

This contig is upended


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JMSF040C19+                                          TAACAGAATCTTTGAAGCAGAAAGGGTTT
                      ____________________________________________________________
consensus                                            TAACAGAATCTTTGAAGCAGAAAGGGTTT
 
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JMSF040C19+           GTGTGATAGATTTAGTATCAGACTCCTTATTTTGAATGTGAAGCTGCCTAACATCATTTT
                      ____________________________________________________________
consensus             GTGTGATAGATTTAGTATCAGACTCCTTATTTTGAATGTGAAGCTGCCTAACATCATTTT
 
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JMSF040C19+           CATTAGCTGTATCGGAGGAATCCTTGACCATCCTTCTCCTGAGTTTTTGCAGCAAAACTT
JMSF026A16+                                                          TGCAGCAAAACTT
                      ____________________________________________________________
consensus             CATTAGCTGTATCGGAGGAATCCTTGACCATCCTTCTCCTGAGTTTTTGCAGCAAAACTT
 
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JMSF040C19+           CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
JMSF026A16+           CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
                      ____________________________________________________________
consensus             CTGAATCCAGTGCTTGTACAGATCTTGAACTATCATCAAGAAGGTCAAATCTCTCTTGTT
 
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JMSF040C19+           CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
JMSF026A16+           CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
                      ____________________________________________________________
consensus             CTCCAAAATCATCAACTTCTGAAATGACAGATACCCTAGCATTTCGTTCACCATGATCAC
 
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JMSF040C19+           GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
JMSF026A16+           GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
                      ____________________________________________________________
consensus             GAAAATCACCTTCTTGCTCTTTTGTATAGCTTTTCTTCACAAGAGCTTTCATTTTATGGA
 
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JMSF040C19+           ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
JMSF026A16+           ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
                      ____________________________________________________________
consensus             ATTTCAATCTGCTAAAACTTCCCGCCAGAGTTTTGTTAGATGCTTTAACGTCGCCGCCAG
 
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JMSF040C19+           TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
JMSF026A16+           TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
                      ____________________________________________________________
consensus             TACGGCCCTTTGCACGGCTCTTGGATTTCCAGGCGGAGAGAAGTTCCTTCGAAGGGATAG
 
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JMSF040C19+           CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
JMSF026A16+           CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
                      ____________________________________________________________
consensus             CAGAGTCGTCATCGTCATTCTCGACTCCTCCCCAAACTATGACTTTCTCTCTTGTATCAT
 
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JMSF040C19+           TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
JMSF026A16+           TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
                      ____________________________________________________________
consensus             TGTCGATAAGCTCGTAAGCGCCGGGGGTGTCCATGGGCCTACGAGTGTAAGAACCTTGAA
 
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JMSF040C19+           CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
JMSF026A16+           CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
                      ____________________________________________________________
consensus             CCTCCACTGCCGCCGCCCTTCTCTTCCTCCTGCAACTAGTAAGGTTTACGACATTGCCGC
 
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JMSF040C19+           TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCTCCGAAATGTGAAAGTATTTACTA
JMSF026A16+           TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCT-CGAAATGTGAAAGTATTTACTA
                      ____________________________________________________________
consensus             TGCCAGCGAGGGGAATAGGTTGCAGTACCATGGCTCTCCGAAATGTGAAAGTATTTACTA
 
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JMSF040C19+           CATATGGTGGCGGAGCCACCGCGGCAGCC                               
JMSF026A16+           CATATGGTGGCGGAGCCACCGCGGCAGCCACCGCTGCGGCCTCGGCAAGCATCATCGTCC
                      ____________________________________________________________
consensus             CATATGGTGGCGGAGCCACCGCGGCAGCCACCGCTGCGGCCTCGGCAAGCATCATCGTCC