clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF015A14 | Sequence | 441 | 006544 (3) | ref|XP_009592048.1| | 3e-19 | PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi | 773 | 001494 (3) | ref|XP_011080768.1| | 137 | PREDICTED: putative tRNA pseudouridine synthase [Sesamum indicum] |
JMSF025L02 | Sequence | 657 | 006544 (3) | ref|XP_009592048.1| | 1e-79 | PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi | 751 | 001494 (3) | ref|XP_006348028.1| | 2e-80 | PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero |
JMSF050A15 | Sequence | 657 | 006544 (3) | ref|XP_009592048.1| | 1e-83 | PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi | 704 | 001494 (3) | ref|XP_006348028.1| | 2e-37 | PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero |
This contig is upended
. : . : . : . : . : . :
JMSF050A15+ TGCGAACATTGCACT
____________________________________________________________
consensus TGCGAACATTGCACT
. : . : . : . : . : . :
JMSF050A15+ CCTTTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
JMSF025L02+ TTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
____________________________________________________________
consensus CCTTTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
. : . : . : . : . : . :
JMSF050A15+ GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
JMSF025L02+ GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
____________________________________________________________
consensus GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
. : . : . : . : . : . :
JMSF050A15+ GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
JMSF025L02+ GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
____________________________________________________________
consensus GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
. : . : . : . : . : . :
JMSF050A15+ TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
JMSF025L02+ TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
____________________________________________________________
consensus TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
. : . : . : . : . : . :
JMSF015A14+ TAGATAGCGCGTGCACAT
JMSF050A15+ CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
JMSF025L02+ CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
____________________________________________________________
consensus CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
. : . : . : . : . : . :
JMSF015A14+ CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
JMSF050A15+ CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
JMSF025L02+ CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
____________________________________________________________
consensus CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
. : . : . : . : . : . :
JMSF015A14+ TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
JMSF050A15+ TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
JMSF025L02+ TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
____________________________________________________________
consensus TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
. : . : . : . : . : . :
JMSF015A14+ GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
JMSF050A15+ GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
JMSF025L02+ GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
____________________________________________________________
consensus GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
. : . : . : . : . : . :
JMSF015A14+ AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
JMSF050A15+ AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
JMSF025L02+ AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
____________________________________________________________
consensus AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
. : . : . : . : . : . :
JMSF015A14+ TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
JMSF050A15+ TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
JMSF025L02+ TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
____________________________________________________________
consensus TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
. : . : . : . : . : . :
JMSF015A14+ CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCT
JMSF050A15+ CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCT
JMSF025L02+ CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCTACAGTGCAGATAAATTCCGGGTCC
____________________________________________________________
consensus CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCTACAGTGCAGATAAATTCCGGGTCC