Contig 006540:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004C17Sequence357006540 (5)ref|XP_011007635.1|5e-10PREDICTED: cysteine-rich receptor-like protein kinase 10 [Populus euphratica]360020281
JMSF017C18Sequence452006540 (5)ref|XP_011007635.1|2e-18PREDICTED: cysteine-rich receptor-like protein kinase 10 [Populus euphratica]760009979 (4)gb|EYU34172.1|4e-57hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF025E21Sequence654006540 (5)gb|KJB34790.1|7e-35hypothetical protein B456_006G083900 [Gossypium raimondii]779009979 (4)gb|EYU34172.1|2e-56hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF032M14Sequence642006540 (5)gb|KJB34798.1|4e-65hypothetical protein B456_006G084300 [Gossypium raimondii]748019362ref|XP_011459229.1|4e-49PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Fragaria
JMSF048M19Sequence660006540 (5)gb|KJB34798.1|3e-41hypothetical protein B456_006G084300 [Gossypium raimondii]654009979 (4)gb|EYU34172.1|6e-33hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032M14+ CTAGCAGAACATT
                      ____________________________________________________________
consensus CTAGCAGAACATT
 
. : . : . : . : . : . :
JMSF032M14+ ACTAGCATTGAGATTCCGATGAATAATGCGAATAGGAGAACCTTCGTGCAGATAAATAAG
                      ____________________________________________________________
consensus ACTAGCATTGAGATTCCGATGAATAATGCGAATAGGAGAACCTTCGTGCAGATAAATAAG
 
. : . : . : . : . : . :
JMSF032M14+ CCCTCTGGCAATGCATTCTATTATTTTGTAACGTCTCTTCCAATTCAAACATCCACGTTT
                      ____________________________________________________________
consensus CCCTCTGGCAATGCATTCTATTATTTTGTAACGTCTCTTCCAATTCAAACATCCACGTTT
 
. : . : . : . : . : . :
JMSF032M14+ TACAGGATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
JMSF048M19+ GATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
JMSF025E21+ GATCAAATAAAAAATTGTCAAGGCTGCCA-TTGGAACAAATTCATATACCAGAAG
                      ____________________________________________________________
consensus TACAGGATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
 
. : . : . : . : . : . :
JMSF032M14+ CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
JMSF048M19+ CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCNCCAAATTCCTGTGTTGAAACTT
JMSF025E21+ CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
                      ____________________________________________________________
consensus CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
 
. : . : . : . : . : . :
JMSF032M14+ GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF048M19+ GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF017C18+ CCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF025E21+ GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
                      ____________________________________________________________
consensus GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
 
. : . : . : . : . : . :
JMSF032M14+ CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF048M19+ CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF017C18+ CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF004C17+ AATGTACCCTTGTACATAACACCAAAACC
JMSF025E21+ CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
                      ____________________________________________________________
consensus CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
 
. : . : . : . : . : . :
JMSF032M14+ TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF048M19+ TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTNTGAATAGTGATGAA
JMSF017C18+ TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF004C17+ TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF025E21+ TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
                      ____________________________________________________________
consensus TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
 
. : . : . : . : . : . :
JMSF032M14+ ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF048M19+ ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF017C18+ ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF004C17+ ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF025E21+ ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
                      ____________________________________________________________
consensus ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
 
. : . : . : . : . : . :
JMSF032M14+ TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF048M19+ TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF017C18+ TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF004C17+ TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF025E21+ TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
                      ____________________________________________________________
consensus TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
 
. : . : . : . : . : . :
JMSF032M14+ CATAAAAACTAAACTCAAAGATTAGGAGAACAC
JMSF048M19+ CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
JMSF017C18+ CATAAAAACTAAACTCAAAGATTAGGAGAACAC
JMSF004C17+ CATAAAAACTAAACTCAAAGATTAGGAGAACAC
JMSF025E21+ CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
                      ____________________________________________________________
consensus CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
 
. : . : . : . : . : . :
JMSF048M19+ TGAAGAATAATCAAAATTGAAATACCNTAAATGAAAACGCAAATCGAAACAAATTAATAC
JMSF025E21+ TGAAGAATAATCAAAATTGAAATACCCTAAATGAAAACGCAAATCGAAACAAATTAATAC
                      ____________________________________________________________
consensus TGAAGAATAATCAAAATTGAAATACCCTAAATGAAAACGCAAATCGAAACAAATTAATAC
 
. : . : . : . : . : . :
JMSF048M19+ CACAGACCACCATTCACAGTCGTNTGCTAGAATTCCNTGAGCTGCAACTCCATCATATCG
JMSF025E21+ CACAGACCACCATTCACAGTCGTCTGCTAGAATTCCCTGAGCTGCAACTCCATCATATCG
                      ____________________________________________________________
consensus CACAGACCACCATTCACAGTCGTCTGCTAGAATTCCCTGAGCTGCAACTCCATCATATCG
 
. : . : . : . : . : . :
JMSF048M19+ CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACT
JMSF025E21+ CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACTCC
                      ____________________________________________________________
consensus CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACTCC