Contig 006540:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004C17Sequence357006540 (5)ref|XP_011007635.1|5e-10PREDICTED: cysteine-rich receptor-like protein kinase 10 [Populus euphratica]360020281
JMSF017C18Sequence452006540 (5)ref|XP_011007635.1|2e-18PREDICTED: cysteine-rich receptor-like protein kinase 10 [Populus euphratica]760009979 (4)gb|EYU34172.1|4e-57hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF025E21Sequence654006540 (5)gb|KJB34790.1|7e-35hypothetical protein B456_006G083900 [Gossypium raimondii]779009979 (4)gb|EYU34172.1|2e-56hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF032M14Sequence642006540 (5)gb|KJB34798.1|4e-65hypothetical protein B456_006G084300 [Gossypium raimondii]748019362ref|XP_011459229.1|4e-49PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Fragaria
JMSF048M19Sequence660006540 (5)gb|KJB34798.1|3e-41hypothetical protein B456_006G084300 [Gossypium raimondii]654009979 (4)gb|EYU34172.1|6e-33hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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JMSF032M14+                                                          CTAGCAGAACATT
                      ____________________________________________________________
consensus                                                            CTAGCAGAACATT
 
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JMSF032M14+           ACTAGCATTGAGATTCCGATGAATAATGCGAATAGGAGAACCTTCGTGCAGATAAATAAG
                      ____________________________________________________________
consensus             ACTAGCATTGAGATTCCGATGAATAATGCGAATAGGAGAACCTTCGTGCAGATAAATAAG
 
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JMSF032M14+           CCCTCTGGCAATGCATTCTATTATTTTGTAACGTCTCTTCCAATTCAAACATCCACGTTT
                      ____________________________________________________________
consensus             CCCTCTGGCAATGCATTCTATTATTTTGTAACGTCTCTTCCAATTCAAACATCCACGTTT
 
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JMSF032M14+           TACAGGATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
JMSF048M19+                GATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
JMSF025E21+                GATCAAATAAAAAATTGTCAAGGCTGCCA-TTGGAACAAATTCATATACCAGAAG
                      ____________________________________________________________
consensus             TACAGGATCAAATAAAAAATTGTCAAGGCTGCCATTTGGAACAAATTCATATACCAGAAG
 
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JMSF032M14+           CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
JMSF048M19+           CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCNCCAAATTCCTGTGTTGAAACTT
JMSF025E21+           CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
                      ____________________________________________________________
consensus             CACTTCTTTTCCTTCCAAGCTAAAACCAAGAAGCCTCACCAAATTCCTGTGTTGAAACTT
 
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JMSF032M14+           GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF048M19+           GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF017C18+                         CCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
JMSF025E21+           GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
                      ____________________________________________________________
consensus             GGCCATTAAAGCGGCCTTATTTTTAAATTCTTGACAACCTCCCTTTAAATTTTGAGACAA
 
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JMSF032M14+           CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF048M19+           CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF017C18+           CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
JMSF004C17+                                          AATGTACCCTTGTACATAACACCAAAACC
JMSF025E21+           CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
                      ____________________________________________________________
consensus             CCTCTTTACAGCAACTAGTCGTCCGTCTTCAAATGTACCCTTGTACATAACACCAAAACC
 
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JMSF032M14+           TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF048M19+           TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTNTGAATAGTGATGAA
JMSF017C18+           TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF004C17+           TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
JMSF025E21+           TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
                      ____________________________________________________________
consensus             TCCTTCTCCTATCTTGTTTGTCTGGGAGAAGTTATTTGTTGCATTCTGAATAGTGATGAA
 
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JMSF032M14+           ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF048M19+           ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF017C18+           ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF004C17+           ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
JMSF025E21+           ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
                      ____________________________________________________________
consensus             ATCATACTCCACAGACTCCTCCGCAAAACTAATTTCTTCCGAATCAGAGTTTTCATAACA
 
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JMSF032M14+           TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF048M19+           TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF017C18+           TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF004C17+           TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
JMSF025E21+           TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
                      ____________________________________________________________
consensus             TTTGGGCTTCAATTTCTTCATTTTTCTTAAGATTTGGAAACCAATCCATTTCAGGGAATC
 
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JMSF032M14+           CATAAAAACTAAACTCAAAGATTAGGAGAACAC                           
JMSF048M19+           CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
JMSF017C18+           CATAAAAACTAAACTCAAAGATTAGGAGAACAC                           
JMSF004C17+           CATAAAAACTAAACTCAAAGATTAGGAGAACAC                           
JMSF025E21+           CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
                      ____________________________________________________________
consensus             CATAAAAACTAAACTCAAAGATTAGGAGAACACTGGAAAAAAATGAAGTTTAAGTAGAAT
 
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JMSF048M19+           TGAAGAATAATCAAAATTGAAATACCNTAAATGAAAACGCAAATCGAAACAAATTAATAC
JMSF025E21+           TGAAGAATAATCAAAATTGAAATACCCTAAATGAAAACGCAAATCGAAACAAATTAATAC
                      ____________________________________________________________
consensus             TGAAGAATAATCAAAATTGAAATACCCTAAATGAAAACGCAAATCGAAACAAATTAATAC
 
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JMSF048M19+           CACAGACCACCATTCACAGTCGTNTGCTAGAATTCCNTGAGCTGCAACTCCATCATATCG
JMSF025E21+           CACAGACCACCATTCACAGTCGTCTGCTAGAATTCCCTGAGCTGCAACTCCATCATATCG
                      ____________________________________________________________
consensus             CACAGACCACCATTCACAGTCGTCTGCTAGAATTCCCTGAGCTGCAACTCCATCATATCG
 
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JMSF048M19+           CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACT  
JMSF025E21+           CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACTCC
                      ____________________________________________________________
consensus             CTAGTTGACCACGACCCAGAAGGCATGCAGAAGCTTCCCGGCACAAGTGTTGGATACTCC