clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF004C10 | Sequence | 316 | 006539 (5) | ref|XP_007025158.1| | 8e-17 | Purine permease 10 [Theobroma cacao] gb|EOY27780.1| Purine permease 10 [Theobrom | 455 | 013898 (3) | gb|AAS79605.1| | 4e-59 | putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] |
JMSF025B07 | Sequence | 685 | 006539 (5) | ref|XP_009782581.1| | 3e-66 | PREDICTED: probable purine permease 10 isoform X1 [Nicotiana sylvestris] | 721 | 006539 (5) | ref|XP_009608566.1| | 1e-70 | PREDICTED: probable purine permease 10 isoform X2 [Nicotiana tomentosiformis] |
JMSF030B10 | Sequence | 677 | 006539 (5) | ref|XP_009782581.1| | 3e-66 | PREDICTED: probable purine permease 10 isoform X1 [Nicotiana sylvestris] | 713 | 006539 (5) | ref|XP_009608565.1| | 2e-66 | PREDICTED: probable purine permease 9 isoform X1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF025B07- GGAGTCTTACACTTAACAGTAATAAAACTAAAAAGAGTGC
rJMSF030B10- ACAGTAATAAAACTAAAAAGAGTGC
____________________________________________________________
consensus GGAGTCTTACACTTAACAGTAATAAAACTAAAAAGAGTGC
. : . : . : . : . : . :
rJMSF025B07- ATATTCTGGAACTGGATGGGACAACAACTACTACTACTACACCAATTTACACTGTATGAA
rJMSF030B10- ATATTCTGGAACTGGATGGGACAACAACTACTACTACTACACCAATTTACACTGTATGAA
____________________________________________________________
consensus ATATTCTGGAACTGGATGGGACAACAACTACTACTACTACACCAATTTACACTGTATGAA
. : . : . : . : . : . :
rJMSF025B07- CCAGAGCAAGTTGAGAAACTTGTTGTTCTCTCTGAACAGCCTTAGCCTTGGCCTTTTCTT
rJMSF030B10- CCAGAGCAAGTTGAGAAACTTGTTGTTCTCTCTGAACAGCCTTAGCCTTGGCCTTTTCTT
____________________________________________________________
consensus CCAGAGCAAGTTGAGAAACTTGTTGTTCTCTCTGAACAGCCTTAGCCTTGGCCTTTTCTT
. : . : . : . : . : . :
rJMSF025B07- TCACATCATCAAGATAGTGCTGGTAGATATAGGACACAAAACCCCAGATGGCTAAGACCA
rJMSF030B10- TCACATCATCAAGATAGTGCTGGTAGATATAGGACACAAAACCCCAGATGGCTAAGACCA
____________________________________________________________
consensus TCACATCATCAAGATAGTGCTGGTAGATATAGGACACAAAACCCCAGATGGCTAAGACCA
. : . : . : . : . : . :
rJMSF025B07- TTGATATCACCTTCACACCATTCATCTTGTCATTGAGAATAAACACTGCCAGAACAGGCG
rJMSF030B10- TTGATATCACCTTCACACCATTCATCTTGTCATTGAGAATAAACACTGCCAGAACAGGCG
____________________________________________________________
consensus TTGATATCACCTTCACACCATTCATCTTGTCATTGAGAATAAACACTGCCAGAACAGGCG
. : . : . : . : . : . :
rJMSF025B07- GAATAGGCAACCCCAAAATGCTAATCACATTGGAGAACAAAGATGAGACCTTAAATATGA
rJMSF030B10- GAATAGGCAACCCCAAAATGCTAATCACATTGGAGAACAAAGATGAGACCTTAAATATGA
____________________________________________________________
consensus GAATAGGCAACCCCAAAATGCTAATCACATTGGAGAACAAAGATGAGACCTTAAATATGA
. : . : . : . : . : . :
rJMSF025B07- GCCCAATGCACCCAACGCTGAAGAATTGCCACCCCACCGCCGTCCAAGTCAAGTTCATCA
rJMSF030B10- GCCCAATGCACCCAACGCTGAAGAATTGCCACCCCACCGCCGTCCAAGTCAAGTTCATCA
____________________________________________________________
consensus GCCCAATGCACCCAACGCTGAAGAATTGCCACCCCACCGCCGTCCAAGTCAAGTTCATCA
. : . : . : . : . : . :
rJMSF025B07- CATACGAGGTTTTCCCCAGCTCAAACCCATCCATCTCCGCCCCCAATCTCCTCCACTCCC
rJMSF030B10- CATACGAGGTTTTCCCCAGCTCAAACCCATCCATCTCCGCCCCCAATCTCCTCCACTCCC
____________________________________________________________
consensus CATACGAGGTTTTCCCCAGCTCAAACCCATCCATCTCCGCCCCCAATCTCCTCCACTCCC
. : . : . : . : . : . :
rJMSF025B07- CGCTCGCGAAAAGCCCCGCCACGATCGCCGCCGACGCCACCGCCGACTGGTAGATCGTCA
rJMSF030B10- CGCTCGCGAAAAGCCCCGCCACGATCGCCGCCGACGCCACCGCCGACTGGTAGATCGTCA
____________________________________________________________
consensus CGCTCGCGAAAAGCCCCGCCACGATCGCCGCCGACGCCACCGCCGACTGGTAGATCGTCA
. : . : . : . : . : . :
rJMSF025B07- TCTCGATAACCAGCCGGAAAGTCTCCGCCTTCTTGAAGATCCTGGAGAACGCCAGCTGCG
rJMSF030B10- TCTCGATAACCAGCCGGAAAGTCTCCGCCTTCTTGAAGATCCTGGAGAACGCCAGCTGCG
____________________________________________________________
consensus TCTCGATAACCAGCCGGAAAGTCTCCGCCTTCTTGAAGATCCTGGAGAACGCCAGCTGCG
. : . : . : . : . : . :
rJMSF025B07- TCAGGGAGAGCAGCAACGCGTAGCCCGCGGACGCGGCTAGGGTGGACACGAAGCCTATGA
rJMSF030B10- TCAGGGAGAGCAGCAACGCGTAGCCCGCGGACGCGGCTAGGGTGGACACGAAGCCTATGA
____________________________________________________________
consensus TCAGGGAGAGCAGCAACGCGTAGCCCGCGGACGCGGCTAGGGTGGACACGAAGCCTATGA
. : . : . : . : . : . :
rJMSF025B07- TGTACTTTCTCCGGGAGGTCTTGGCGTCGCCGCCGTCGCCGCCGGGTTGGAGTACGAGGA
rJMSF030B10- TGTACTTTCTCCGGGAGGTCTTGGCGTCGCCGCCGTCGCCGCCGGGTTGGAGTACGAGGA
JMSF030B10+ GCGTCGCCGCCGTCGCCGCCGGGTTGGAGTACGAGGA
JMSF025B07+ TCGCCGCCGGGTTGGAGTACGAGGA
____________________________________________________________
consensus TGTACTTTCTCCGGGAGGTCTTGGCGTCGCCGCCGTCGCCGCCGGGTTGGAGTACGAGGA
. : . : . : . : . : . :
rJMSF025B07- GGGTGGAAGAGAGGGTGAGGA
rJMSF030B10- GGGTGGAAGAGAGGGTGAGGA
JMSF030B10+ GGGTGGAAGAGAGGGTGAGGAGGACGAGGGAGTTGACGATGTAAGGGGTGAATTTCTGGG
JMSF025B07+ GGGTGGAAGAGAGGGTGAGGAGGACGAGGGAGTTGACGATGTAAGGGGTGAATTTCTGGG
____________________________________________________________
consensus GGGTGGAAGAGAGGGTGAGGAGGACGAGGGAGTTGACGATGTAAGGGGTGAATTTCTGGG
. : . : . : . : . : . :
JMSF030B10+ CGTTGAGGAAGAAGGAGAAGAGGGCATTGAACCCAAGCTGGCTGGCGCAGATGAGCGAAT
JMSF025B07+ CGTTGAGGAAGAAGGAGAAGAGGGCATTGAACCCAAGCTGGCTGGCGCAGATGAGCGAAT
____________________________________________________________
consensus CGTTGAGGAAGAAGGAGAAGAGGGCATTGAACCCAAGCTGGCTGGCGCAGATGAGCGAAT
. : . : . : . : . : . :
JMSF030B10+ ATGTGGTCACCGGAAGGTACTCTATGCCCACTGTGTATAACATGCAATTTACGGCGACGG
JMSF025B07+ ATGTGGTCACCGGAAGGTATTCTATGCCCACTGTGTATAACATGCAATTTACGGCGACGG
____________________________________________________________
consensus ATGTGGTCACCGGAAGGTATTCTATGCCCACTGTGTATAACATGCAATTTACGGCGACGG
. : . : . : . : . : . :
JMSF030B10+ ATAAACCCAGGAAAACATAAAGAGGAGCAACAATCGTAGGAGAGGGGCTTCTAATTGTGT
JMSF025B07+ ATAAACCCAGGAAAACATAAAGAGGAGCAACAATCGTAGGAGAGGGGCTTCTAATCGTGT
____________________________________________________________
consensus ATAAACCCAGGAAAACATAAAGAGGAGCAACAATCGTAGGAGAGGGGCTTCTAATTGTGT
. : . : . : . : . : . :
JMSF030B10+ CATCTTGTGGTGTGGTGGTTTTGGTTGATGGGAGGAAGAGGAGAGGGATAAGAACTGGGA
JMSF025B07+ CATCTTGTGGTGTGGTGGTTTTGGTTGATGGGAGGAAGAGGAGAGGGATAAGAACTGGGA
____________________________________________________________
consensus CATCTTGTGGTGTGGTGGTTTTGGTTGATGGGAGGAAGAGGAGAGGGATAAGAACTGGGA
. : . : . : . : . : . :
JMSF030B10+ AGCCAACCACTTGGACCAGCGTTGCCATCCATTTGCTATTGCCTCCTTTGTCGAAATACA
JMSF004C10+ CCATCCATTTGCTATTGCCTCCTTTGTCGAAATACA
JMSF025B07+ AGCCAACCACTTGGACCAGCGTTGCCATCCATTTGCTATTGCCTCCTTTGTCGAAATACA
____________________________________________________________
consensus AGCCAACCACTTGGACCAGCGTTGCCATCCATTTGCTATTGCCTCCTTTGTCGAAATACA
. : . : . : . : . : . :
JMSF030B10+ GCCGGCCCAGAAGCGTGCCAATAGACTGGCCAGACAGTACAAAAATGGAGTACACGCCCA
JMSF004C10+ GCCGGCCCAGAAGCGTGCCAATAGACTGGCCAGACAGTACAAAAATGGAGTACACGCCCA
JMSF025B07+ GCCGGCCCAGAAGCGTGCCAATAGACTGGCCAGACAGTACAAAAATGGAGTACACGCCCA
____________________________________________________________
consensus GCCGGCCCAGAAGCGTGCCAATAGACTGGCCAGACAGTACAAAAATGGAGTACACGCCCA
. : . : . : . : . : . :
JMSF030B10+ TTTCTGCCCACCATTTGTATTGACCTCCACGCCAAAATTTTCTCGATTGCTCACTAACAA
JMSF004C10+ TTTCTGCCCACCATTTGTATTGACCTCCACGCCAAAATTTTCTCGATTGCTCACTAACAA
JMSF025B07+ TTTCTGCCCACCATTTGTATTGACCTCCACGCCAAAATTTTCTCGATTGCTCACTAACAA
____________________________________________________________
consensus TTTCTGCCCACCATTTGTATTGACCTCCACGCCAAAATTTTCTCGATTGCTCACTAACAA
. : . : . : . : . : . :
JMSF030B10+ CATCATTCGCATTAATGTCGTTTTCTTCCTTAGCTTCCTCTCCTGGAGGGAGTTGCGACT
JMSF004C10+ CATCATTCGCATTAATGTCGTTTTCTTCCTTAGCTTCCTCTCCTGGAGGGAGTTGCGACT
JMSF025B07+ CATCATTCGCATTAATGTCGTTTTCTTCCTTAGCTTCCTCTCCTGGAGGGAGTTGCGACT
____________________________________________________________
consensus CATCATTCGCATTAATGTCGTTTTCTTCCTTAGCTTCCTCTCCTGGAGGGAGTTGCGACT
. : . : . : . : . : . :
JMSF030B10+ TCATCTCTGGGATATCCCCCACCGCCATAGCCAAGGAGCTCCGATGAAATATTTTAGTAT
JMSF004C10+ TCATCTCTGGGATATCCCCCACCGCCATAGCCAAGGAGCTCCGATGAAATATTTTAGTAT
JMSF025B07+ TCATCTCTGGGATATCCCCCACCGCCATAGCCAAGGAGCTCCGATGAAATATTTTAGTAT
____________________________________________________________
consensus TCATCTCTGGGATATCCCCCACCGCCATAGCCAAGGAGCTCCGATGAAATATTTTAGTAT
. : . : . : . : . : . :
JMSF030B10+ GTAAGAGTTGGAGTTAAGTGATAAGTTTGATATGGGGA
JMSF004C10+ GTAAGAGTTGGAGTTAAGTGATAAGTTTGATATGGGGA
JMSF025B07+ GTAAGAGTTGGAGTTAAGTGATAAGTTTGATATGGGGATAGGCCGACATATGCATATCTC
____________________________________________________________
consensus GTAAGAGTTGGAGTTAAGTGATAAGTTTGATATGGGGATAGGCCGACATATGCATATCTC