Contig 006536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS160H04Sequence554006536 (2)ref|XP_011022766.1|3e-51PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Populus euphratica]
JMSF024N22Sequence659006536 (2)ref|XP_011022766.1|3e-63PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Populus euphratica]803011253 (3)ref|XP_006355366.1|3e-134PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024N22+            TTCTTAGNTCCCAGATTGAGAACAGAGCCTCCCCAGAGACTGTACTGAACACCCATTTT
                      ____________________________________________________________
consensus              TTCTTAGNTCCCAGATTGAGAACAGAGCCTCCCCAGAGACTGTACTGAACACCCATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           GATGGCAAGAGATACGTCAACGGCCCCAACAGCCTCCACAATAGCGAAATACTTACTAGG
JMSF024N22+           GATGGCAAGAGATACGTCAACGGCCCCAACAGCCTCCACAATAGCGAAATACTTACTAGG
                      ____________________________________________________________
consensus             GATGGCAAGAGATACGTCAACGGCCCCAACAGCCTCCACAATAGCGAAATACTTACTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           CTCCTCCACCACGTACCTGAGCGGCCTTACCCCGGCCTCCCGGACCAGACCAGAGAGCTG
JMSF024N22+           CTCCTCCACCACGTACCTGAGCGGCCTTACCCCGGCCTCCCGGACCAGACCAGAGAGCTG
                      ____________________________________________________________
consensus             CTCCTCCACCACGTACCTGAGCGGCCTTACCCCGGCCTCCCGGACCAGACCAGAGAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           TCTCATGCACAATTCCCGGTGCTCATCCTTCAGAATATCCAGCGGCGTCTGCAGGCCCGG
JMSF024N22+           TCTCATGCACAATTCCCGGTGCTCATCCTTCAGAATATCCAGCGGCGTCTGCAGGCCCGG
                      ____________________________________________________________
consensus             TCTCATGCACAATTCCCGGTGCTCATCCTTCAGAATATCCAGCGGCGTCTGCAGGCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           CCTGGAGCTGAAGTACTCGTACACCTTCTCCTGCAACTCCCTGTGCTCCCCCCTCAGGTA
JMSF024N22+           CCTGGAGCTGAAGTACTCGTACACCTTCTCCTGCAACTCCCTGTGCTCCCCCCTCAGGTA
                      ____________________________________________________________
consensus             CCTGGAGCTGAAGTACTCGTACACCTTCTCCTGCAACTCCCTGTGCTCCCCCCTCAGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           CACCGACAACTCCTTGGTATTCACCGTCAGAACCTTCGCCCTAGCGGCACACGTCAGCAT
JMSF024N22+           CACCGACAACTCCTTGGTATTCACCGTCAGAACCTTCGCCCTAGCGGCACACGTCAGCAT
                      ____________________________________________________________
consensus             CACCGACAACTCCTTGGTATTCACCGTCAGAACCTTCGCCCTAGCGGCACACGTCAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           CTCCAGGCGGCTGTCCGCGGAGTTGTCCAGGAACGTCGCCGGCGTGAGGTGCATTGACAG
JMSF024N22+           CTCCAGGCGGCTGTCCGCGGAGTTGTCCAGGAACGTCGCCGGCGTGAGGTGCATTGACAG
                      ____________________________________________________________
consensus             CTCCAGGCGGCTGTCCGCGGAGTTGTCCAGGAACGTCGCCGGCGTGAGGTGCATTGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           CCGTCGGATGCGGCGGTTAATCAGTTGCGTCTCCTCCCGATTTTCGTCCTCCGCCGTGCG
JMSF024N22+           CCGTCGGATGCGGCGGTTAATCAGTTGCGTCTCCTCCCGATTTTCGCCCTCCGCCGTGCG
                      ____________________________________________________________
consensus             CCGTCGGATGCGGCGGTTAATCAGTTGCGTCTCCTCCCGATTTTCGTCCTCCGCCGTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           ATTCAGACGTTGCGACGTCATCTTCCGATGATCCATAGCAGCGCTATGCATCTACCGAAC
JMSF024N22+           ATTCAGACGTTGCGACGTCATCTTCCGATGATCCATAGCAGCGCTATGCATCTACCGAAC
                      ____________________________________________________________
consensus             ATTCAGACGTTGCGACGTCATCTTCCGATGATCCATAGCAGCGCTATGCATCTACCGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           AGAGTGGTGTGTACGGAATTATTGTACGGTTCCGCAGAGAGAAGTAGAGAAGCGATCGGA
JMSF024N22+           AGAGTGGTGTGTACGGAATTATTGTACGGTTCCGCAGAGAGAAGTAGAGAAGCGATCGGA
                      ____________________________________________________________
consensus             AGAGTGGTGTGTACGGAATTATTGTACGGTTCCGCAGAGAGAAGTAGAGAAGCGATCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160H04+           GAAGAAGGAAGTGA                                              
JMSF024N22+           GAAGAAGGAAGTGACTTTTACGGCAAATTAAATTGGATTAGTTGAAATGGAGAGATTAGA
                      ____________________________________________________________
consensus             GAAGAAGGAAGTGACTTTTACGGCAAATTAAATTGGATTAGTTGAAATGGAGAGATTAGA