Contig 006535:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+                                                                   GGAT
                      ____________________________________________________________
consensus                                                                     GGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           GGAATACACCCCCCGAGATGGTTATTGGCCAAAACCAAAACGGAAACCGGCGAGTTCCCG
                      ____________________________________________________________
consensus             GGAATACACCCCCCGAGATGGTTATTGGCCAAAACCAAAACGGAAACCGGCGAGTTCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           AGGTTGGGCGGGATGCCGAAACGGAACCGGTTGTCGTTGAGGAATAAAGCGTCCAGGTCC
                      ____________________________________________________________
consensus             AGGTTGGGCGGGATGCCGAAACGGAACCGGTTGTCGTTGAGGAATAAAGCGTCCAGGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TTGTCGAAAAGCTTTGACGGCACGGGGCCCTCAAACTCATTGAAACGGAGGTCTAAAAAC
                      ____________________________________________________________
consensus             TTGTCGAAAAGCTTTGACGGCACGGGGCCCTCAAACTCATTGAAACGGAGGTCTAAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TTGAGAGAAGGCATTGAAAGCACGGGCTTAGGGAATCCGCCTGCAAACCGGTTGTTACTG
JMSF024N10+                                                    TGCAAACCGGTTGTTACTG
                      ____________________________________________________________
consensus             TTGAGAGAAGGCATTGAAAGCACGGGCTTAGGGAATCCGCCTGCAAACCGGTTGTTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           AGATCTAGCTCCCTAAGGAGAGTCATGTTTTTGAAGCTCCGGGGAAGCACACCGCAAAAG
JMSF024N10+           AGATCTAGCTCCCTAAGGAGAGTCATGTTTTTGAAGCTCCGGGGAAGCACACCGCAAAAG
                      ____________________________________________________________
consensus             AGATCTAGCTCCCTAAGGAGAGTCATGTTTTTGAAGCTCCGGGGAAGCACACCGCAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           CGATTGGAGTTGAGGTGGAAGAGGGCGAGATGAGAGAGAAGACCGAGTTGAGGGACGAGA
JMFF027I11+                                    CGAGATGAGAGAGAAGACCGAGTTGAGGGACGAGA
JMSF024N10+           CGATTGGAGTTGAGGTGGAAGAGGGCGAGATGAGAGAGAAGACCGAGTTGAGGGACGAGA
                      ____________________________________________________________
consensus             CGATTGGAGTTGAGGTGGAAGAGGGCGAGATGAGAGAGAAGACCGAGTTGAGGGACGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TGCCCAGCAATGTCTGCATGGTTGAGGTCGATACCCGCCACCACTCTCGTAGAAGTAGTG
JMFF027I11+           TGCCCAGCAATGTCTGCATGGTTGAGGTCGATACCCGCCACCACTCTCGTAGAAGTAGTG
JMSF024N10+           TGCCCAGCAATGTCTGCATGGTTGAGGTCGATACCCGCCACCACTCTCGTAGAAGTAGTG
                      ____________________________________________________________
consensus             TGCCCAGCAATGTCTGCATGGTTGAGGTCGATACCCGCCACCACTCTCGTAGAAGTAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           GGCAAAGGGGCGCAGTATACTCCGGTATAAGAGCACACATCCGCTCCTATCCAATTCGCC
JMFF027I11+           GGCAAAGGGGCGCAGTATACTCCGGTATAAGAGCACACATCCGCTCCTATCCAATTCGCC
JMSF024N10+           GGCAAAGGGGCGCAGTATACTCCGGTATAAGAGCACACATCCGCTCCTATCCAATTCGCC
                      ____________________________________________________________
consensus             GGCAAAGGGGCGCAGTATACTCCGGTATAAGAGCACACATCCGCTCCTATCCAATTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           GTGAAGTTTAAGGGGTCGGAGAGAATGACTTCCTTCCATGATTGGAGCGCAATGTAGGCG
JMFF027I11+           GTGAAGTTTAAGGGGTCGGAGAGAATGACTTCCTTCCATGATTGGAGCGCAATGTAGGCG
JMSF024N10+           GTGAAGTTTAAGGGGTCGGAGAGAATGACTTCCTTCCATGATTGGAGCGCAATGTAGGCG
                      ____________________________________________________________
consensus             GTGAAGTTTAAGGGGTCGGAGAGAATGACTTCCTTCCATGATTGGAGCGCAATGTAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TCTCGGAGGCGCTGGTTCTCGAAGTTGAGTCTCTTGGCCGCATTTACAATGTCGTCGTCA
JMFF027I11+           TCTCGGAGGCGCTGGTTCTCGAAGTTGAGTCTCTTGGCCGCATTTACAATGTCGTCGTCA
JMSF024N10+           TCTCGGAGGCGCTGGTTCTCGAAGTTGAGTCTCTTGGCCGCATTTACAATGTCGTCGTCA
                      ____________________________________________________________
consensus             TCTCGGAGGCGCTGGTTCTCGAAGTTGAGTCTCTTGGCCGCATTTACAATGTCGTCGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TCAGCATCGGCGCCGATCTGGAGGAACAACGTCACATACACAAAAAGGAAAAAGAGGCGC
JMFF027I11+           TCAGCATCGGCGCCGATCTGGAGGAACAACGTCACATACACAAAAAGGAAAAAGAGGCGC
JMSF024N10+           TCAGCATCGGCGCCGATCTGGAGGAACAACGTCACATACACAAAAAGGAAAAAGAGGCGC
                      ____________________________________________________________
consensus             TCAGCATCGGCGCCGATCTGGAGGAACAACGTCACATACACAAAAAGGAAAAAGAGGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039B13+           TGCACCCGCATCTTTGATTCTGATCTCATCTTC                           
JMFF027I11+           TGCACCCGCATCTTTGATTCTGATCTCATCTTCAACAAAACCAAACCTAATTTCTTTCTT
JMSF024N10+           TGCACCCGCATCTTTGATTCTGATCTCATCTTCAACAAAACCAAACCTAATTTCTTTCTT
                      ____________________________________________________________
consensus             TGCACCCGCATCTTTGATTCTGATCTCATCTTCAACAAAACCAAACCTAATTTCTTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027I11+           TAATTTCACTGGACTACTTCTCCGCCCTACCCAGTTAGCTGCGCTATTGAATTTGAAGTA
JMSF024N10+           TAATTTCACTGGACTACTTCTCCGCCCTACCCAGTTAGCTGCGCTATTGAATTTGAAGTA
                      ____________________________________________________________
consensus             TAATTTCACTGGACTACTTCTCCGCCCTACCCAGTTAGCTGCGCTATTGAATTTGAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027I11+           GTTGGAAAATCAGAGGAGTTAAGGCACCCTGCCTGCCTCCCTGCAAAAGATGCTCTTTAT
JMSF024N10+           GTTGGAAAATCAGAGGAGTTAAGGCACCCTGCCTGCCTCCCTGCAAAAGATGCTCTTTAT
                      ____________________________________________________________
consensus             GTTGGAAAATCAGAGGAGTTAAGGCACCCTGCCTGCCTCCCTGCAAAAGATGCTCTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027I11+           ATTTTCACTTT                                                 
JMSF024N10+           ATTTTCACTTTGCTTGAAAGAAGCCCAAACGGAAAAAGGGATAAATAGAGAGGGATAATC
                      ____________________________________________________________
consensus             ATTTTCACTTTGCTTGAAAGAAGCCCAAACGGAAAAAGGGATAAATAGAGAGGGATAATC