Contig 006531:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028E06Sequence516006531 (2)ref|XP_009592242.1|1e-90PREDICTED: F-box/LRR-repeat protein 2 [Nicotiana tomentosiformis]
JMSF024H11Sequence665006531 (2)ref|XP_004236856.1|4e-111PREDICTED: F-box/LRR-repeat protein 2 [Solanum lycopersicum]808024574ref|XP_002513122.1|2e-38glucose regulated repressor protein, putative [Ricinus communis] gb|EEF49625.1|

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024H11+                                                                  CTAAG
                      ____________________________________________________________
consensus                                                                    CTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+                             CCTTCAACAAGAACAGTGATACCAGAATCAGTAATGTTGGTG
JMSF024H11+           TGTTTCATTNTATGACAACCTTCAACAAGAACAGTGATACCAGAATCAGTAATGTTGGTG
                      ____________________________________________________________
consensus             TGTTTCATTNTATGACAACCTTCAACAAGAACAGTGATACCAGAATCAGTAATGTTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           CATCCTTGTAAACCCAATTCTTCTAGATTATGACACTTCTCCGAGAGAGCTTTCAATAAT
JMSF024H11+           CATCCTTGTAAACCCAATTCTTCTAGATTATGACACTTCTCCGAGAGAGCTTTCAATAAT
                      ____________________________________________________________
consensus             CATCCTTGTAAACCCAATTCTTCTAGATTATGACACTTCTCCGAGAGAGCTTTCAATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           GCGTCTGACACAAATCTACAGCCAGCAAGATGCAAGGCCCTCAGGTCATGACAACCTCCA
JMSF024H11+           GCGTCTGACACAAATCTACAGCCAGCAAGATGCAAGGCCCTCAGGTCATGACAACCTCCA
                      ____________________________________________________________
consensus             GCGTCTGACACAAATCTACAGCCAGCAAGATGCAAGGCCCTCAGGTCATGACAACCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           GCAACAGCTGATAGCCCCTTATCTGTTAGTTTTCTGCAGTAAGATACATCTAAGGACTGT
JMSF024H11+           GCAACAGCTGATAGCCCCTTATCTGTTAGTTTTCTGCAGTAAGATACATCTAAGGACTGT
                      ____________________________________________________________
consensus             GCAACAGCTGATAGCCCCTTATCTGTTAGTTTTCTGCAGTAAGATACATCTAAGGACTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           AGAGAGCTGAGACCAGAACCAATGGCTCTCATTCCAACATCTGTTATGCCTTTGCAGTTT
JMSF024H11+           AGAGAGCTGAGACCAGAACCAATGGCTCTCATTCCAACATCTGTTATGCCTTTGCAGTTT
                      ____________________________________________________________
consensus             AGAGAGCTGAGACCAGAACCAATGGCTCTCATTCCAACATCTGTTATGCCTTTGCAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           TGAAGATTGAGAATTTGCAAGCAAGAGAAAGCAGTGGCGATGACGGAGAGATCGTCGTCA
JMSF024H11+           TGAAGATTGAGAATTTGCAAGCAAGAGAAAGCAGTGGCGATGACGGAGAGATCGTCGTCA
                      ____________________________________________________________
consensus             TGAAGATTGAGAATTTGCAAGCAAGAGAAAGCAGTGGCGATGACGGAGAGATCGTCGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           GTGACGCCAGGGAAGAAGGACCTCGAGACAGACTGGGAGAGATCCAGCTCGCGAAGGCGG
JMSF024H11+           GTGACGCCAGGGAAGAAGGACCTCGAGACAGACTGGGAGAGATCCAGCTCGCGAAGGCGG
                      ____________________________________________________________
consensus             GTGACGCCAGGGAAGAAGGACCTCGAGACAGACTGGGAGAGATCCAGCTCGCGAAGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           GTGAAGCGTGCGGCGAGTCGGCAGAGCATGAAGGGGCCAGCCCTGGCGCAGAGCTTCTTC
JMSF024H11+           GTGAAGCGTGCGGCGAGTCGGCAGAGCATGAAGGGGCCAGCCCTGGCGCAGAGCTTCTTC
                      ____________________________________________________________
consensus             GTGAAGCGTGCGGCGAGTCGGCAGAGCATGAAGGGGCCAGCCCTGGCGCAGAGCTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028E06+           CTCTCAGTGCTCTGGAGGCGGAGCCACCGCTTGCAGACCAACCCGAAGTTT         
JMSF024H11+           CTCTCAGTGCTCTGGAGGCGGAGCCACCGCTTGCAGACCAACCCGAAGTTTTCCTTGTCC
                      ____________________________________________________________
consensus             CTCTCAGTGCTCTGGAGGCGGAGCCACCGCTTGCAGACCAACCCGAAGTTTTCCTTGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024H11+           TTATCGCTCCCCAGTCTTGCCAGCACGGCACGAAGCTCGTCATCTCCCAGGCTGTCGTTA
                      ____________________________________________________________
consensus             TTATCGCTCCCCAGTCTTGCCAGCACGGCACGAAGCTCGTCATCTCCCAGGCTGTCGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024H11+           ATGCAGGGATTATAGATTACGGCGCCGATTTTGGAGTCTGATTCACAGGCCATGGAGACC
                      ____________________________________________________________
consensus             ATGCAGGGATTATAGATTACGGCGCCGATTTTGGAGTCTGATTCACAGGCCATGGAGACC