Contig 006518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009M14Sequence304006518 (5)
JMSF018M12Sequence514006518 (5)emb|CDP02181.1|1e-19unnamed protein product [Coffea canephora]
JMSF023A20Sequence646006518 (5)ref|XP_006338492.1|1e-36PREDICTED: xylosyltransferase 1-like [Solanum tuberosum]418018210
JMSF024A20Sequence613006518 (5)ref|XP_006338492.1|1e-27PREDICTED: xylosyltransferase 1-like [Solanum tuberosum]258017150
JMSF038P23Sequence655006518 (5)ref|XP_006338492.1|8e-51PREDICTED: xylosyltransferase 1-like [Solanum tuberosum]256001130 (19)gb|KJB34129.1|5e-42hypothetical protein B456_006G051300, partial [Gossypium raimondii]

Alignment

This contig is upended


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JMSF038P23+                                GGCGTCGAGGTGGACCACGTACTGGTTGTTGGGATGGTA
                      ____________________________________________________________
consensus                                  GGCGTCGAGGTGGACCACGTACTGGTTGTTGGGATGGTA
 
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JMSF038P23+           CAGGGCCTGGAGAGTCCGCCGGAGCATATTTCCGTCGCCGGCGGAGCCGGAGATGAGGTA
JMSF024A20+                                                          CGGAGATGAGGTA
JMSF023A20+                         TCCGCCGGAGCATATTTCCGTCGCCGGCGGAGCCGGAGATGAGGTA
                      ____________________________________________________________
consensus             CAGGGCCTGGAGAGTCCGCCGGAGCATATTTCCGTCGCCGGCGGAGCCGGAGATGAGGTA
 
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JMSF018M12+                                                    GGCGGAGCTNGGATTCGAT
JMSF038P23+           GGCAATGCGCGGCGGCGGCGGCAGCGCGGAAACGGGGATGGGGCGGAGCTTGGATTCGAT
JMSF024A20+           GGCAATGCGCGGCGGCGGCGGCAGCGCGGAAACGGGGATGGGGCGGAGCTNGGATTCGAT
JMSF023A20+           GGCAATGCGCGGCGGCGGCGGCAGCGCGGAAACGGGGATGGGGCGGAGCTTGGATTCGAT
                      ____________________________________________________________
consensus             GGCAATGCGCGGCGGCGGCGGCAGCGCGGAAACGGGGATGGGGCGGAGCTTGGATTCGAT
 
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JMSF018M12+           AAAAATGGAGGCGGCGGAGGTGGAGGCGTAGTAGCGGTACAGCGGCAGCAGCGGCGTGCC
JMSF038P23+           AAAAATGGAGGCGGCGGAGGTGGAGGCGTAGTAGCGGTACAGCGGCAGCAGCGGCGTGCC
JMSF024A20+           AAAAATGGAGGCGGCGGAGGTGGAGGCGTAGTAGCGGTACAGCGGCAGCAGCGGCGTGCC
JMSF023A20+           AAAAATGGAGGCGGCGGAGGTGGAGGCGTAGTAGCGGTACAGCGGCAGCAGCGGCGTGCC
                      ____________________________________________________________
consensus             AAAAATGGAGGCGGCGGAGGTGGAGGCGTAGTAGCGGTACAGCGGCAGCAGCGGCGTGCC
 
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JMSF018M12+           GTCCGAGGAAGTTAGGGTTGTGAGGAACAACAGAAACAGCGACACAATGGACGCTATTGC
JMSF038P23+           GTCCGAGGAAGTTAGGGTTGTGAGGAACAACAGAAACAGCGACACAATGGACGCTATTGC
JMSF024A20+           GTCCGAGGAAGTTAGGGTTGTGAGGAACAACAGAAACAGCGACACAATGGACGCTATTGC
JMSF023A20+           GTCCGAGGAAGTTAGGGTTGTGAGGAACAACAGAAACAGCGACACAATGGACGCTATTGC
                      ____________________________________________________________
consensus             GTCCGAGGAAGTTAGGGTTGTGAGGAACAACAGAAACAGCGACACAATGGACGCTATTGC
 
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JMSF018M12+           CACCGGAAAGATCCATTTCCGCTCCATTTTCTGCGGGTGTCTCAGATTCAGATAATAGTT
JMSF038P23+           CACCGGAAAGATCCATTTCCGCTCCATTTTCTGCGGGTGTCTCAGATTCAGATAATAGTT
JMSF024A20+           CACCGGAAAGATCCATTTCCGCTCCATTTTCTGCGGGTGTCTCAGATTCAGATAATAGTT
JMSF023A20+           CACCGGAAAGATCCATTTCCGCTCCATTTTCTGCGGGTGTCTCAGATTCAGATAATAGTT
                      ____________________________________________________________
consensus             CACCGGAAAGATCCATTTCCGCTCCATTTTCTGCGGGTGTCTCAGATTCAGATAATAGTT
 
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JMSF018M12+           CCTCAGCTTCTTCATCTCACTCCCACCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
JMSF009M14+                      TCATCTCACTCCCNCCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
JMSF038P23+           CCTCAGCTTCTTCATCTCACTCCCACCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
JMSF024A20+           CCTCAGCTTCTTCATCTCACTCCCACCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
JMSF023A20+           CCTCAGCTTCTTCATCTCACTCCCACCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
                      ____________________________________________________________
consensus             CCTCAGCTTCTTCATCTCACTCCCACCAAACAAATCAAAAAACTCCAAGATTCAGTCTTT
 
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JMSF018M12+           TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
JMSF009M14+           TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
JMSF038P23+           TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
JMSF024A20+           TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
JMSF023A20+           TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
                      ____________________________________________________________
consensus             TCATCAGCTCTGCACTTGATCTGCCACCATTACACTAAACCAACACAAATGGACGAAACC
 
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JMSF018M12+           CAGTAGCTCCAAAACCAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
JMSF009M14+           CAGTAGCTCCAAAACCAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
JMSF038P23+           CAGTAGCTCCAAAACCAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
JMSF024A20+           CAGTAGCTCCAAAACAAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
JMSF023A20+           CAGTAGCTCCAAAACAAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
                      ____________________________________________________________
consensus             CAGTAGCTCCAAAACCAACTCAAAAATCAATTCAATTCAATTCAAATCATCTGGGTTTCA
 
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JMSF018M12+           GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
JMSF009M14+           GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
JMSF038P23+           GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
JMSF024A20+           GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
JMSF023A20+           GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
                      ____________________________________________________________
consensus             GTTTCAGAGTCCTATCCTAAAAATCCTAATCTTTCTGGGCAGGAAGGGATTAGGGTGAAG
 
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JMSF018M12+           AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTTTG
JMSF009M14+           AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTTTG
JMSF038P23+           AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTTTG
JMSF024A20+           AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTNTG
JMSF023A20+           AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTTTG
                      ____________________________________________________________
consensus             AGCAAGAAAGGGGTTTTCAGCTTAATCAATCAGAATCAGAAAATTGCTACGTTTTCTTTG
 
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JMSF018M12+           AGTTTCAGATCTTC                                              
JMSF009M14+           AGTTTCAGATCTTC                                              
JMSF038P23+           AGTTTCAGATCTTC                                              
JMSF024A20+           AGTTTCAGATCTTCGGTAGAAGCAATCATTTCATTTTGTTTATAGTAACAGTACCGCTCC
JMSF023A20+           AGTTTCAGATCTTCGGTAGAAGCAATCATTTCATTTTGTTTATAGTAACAGTACCGCTCC
                      ____________________________________________________________
consensus             AGTTTCAGATCTTCGGTAGAAGCAATCATTTCATTTTGTTTATAGTAACAGTACCGCTCC