| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN004B09 | Sequence | 317 | 006517 (8) | ||||||||
| JMFS032F08 | Sequence | 566 | 006517 (8) | ref|XP_011003600.1| | 7e-18 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Popu | |||||
| JMFS039D03 | Sequence | 583 | 006517 (8) | ref|XP_011003600.1| | 9e-18 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Popu | |||||
| JMSF003M10 | Sequence | 282 | 006517 (8) | 429 | 009145 (4) | emb|CDP07401.1| | 2e-08 | unnamed protein product [Coffea canephora] | |||
| JMSF007D10 | Sequence | 261 | 006517 (8) | 407 | 005124 (3) | emb|CDP07401.1| | 2e-08 | unnamed protein product [Coffea canephora] | |||
| JMSF014M19 | Sequence | 489 | 006517 (8) | ref|XP_009420999.1| | 2e-26 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [Musa acum | 810 | 009145 (4) | gb|EPS58996.1| | 4e-27 | hypothetical protein M569_15816, partial [Genlisea aurea] |
| JMSF022P23 | Sequence | 622 | 006517 (8) | ref|XP_009420999.1| | 1e-27 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [Musa acum | |||||
| JMSF036J03 | Sequence | 627 | 006517 (8) | ref|XP_011003600.1| | 2e-17 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Popu | |||||
This contig is upended
. : . : . : . : . : . :
JMFS032F08+ ACGTCCGAGCATGACTCGCTGATCGCCGGGATGAGATCGCGGATTGTCTCGT
____________________________________________________________
consensus ACGTCCGAGCATGACTCGCTGATCGCCGGGATGAGATCGCGGATTGTCTCGT
. : . : . : . : . : . :
JMFS032F08+ ATATGTCCATGAATTTGAAGAGCCGTCGACGGAGATGGCGTGGTCGTCGAAGATGTCAAG
JMFS039D03+ CGTCGAAGATGTCAAG
JMSF036J03+ CGTCGAAGATGTCAAG
JMSF014M19+ CGTCGAAGATGTCAAG
JMSF022P23+ CGTCGAAGATGTCAAG
____________________________________________________________
consensus ATATGTCCATGAATTTGAAGAGCCGTCGACGGAGATGGCGTGGTCGTCGAAGATGTCAAG
. : . : . : . : . : . :
JMFS032F08+ GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTGCCATTGATGGC
JMFS039D03+ GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTGCCATTGATGGC
JMSF036J03+ GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTGCCATTGATGGC
JMSF014M19+ GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTCCCATTGATGGC
JMSF022P23+ GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTCCCATTGATGGC
____________________________________________________________
consensus GGTGGAGTCGTATTTGAGAAGGTGTGAGGCCTGCTTGACACCTCCGGTGCCATTGATGGC
. : . : . : . : . : . :
JMFS032F08+ AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCA-CTCAAGAAGTTCCTTCCAAT
JMFS039D03+ AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCA-CTCAAGAAGTTCCTTCCAAT
JMSF036J03+ AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCA-CTCAAGAAGTTCCTTCCAAT
JMSF014M19+ AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCATCTCAAGAAGTACCTTCCAAT
JMSF022P23+ AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCATCTCAAGAAGTACCTTCCAAT
____________________________________________________________
consensus AATGACATCAAGGGGAGAATCCTTCCTTCCATGCCAGCA-CTCAAGAAGTTCCTTCCAAT
. : . : . : . : . : . :
JMFS032F08+ TCTTCCGAATCCATGAATGCCCCCCTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
JMFS039D03+ TCTTCCGAATCCATGAATGCCCCCCTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
JMFN004B09+ CCTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
JMSF003M10+ TCTATAGCC
JMSF036J03+ TCTTCCGAATCCATGAATGCCCCCCTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
JMSF014M19+ TCTTCCGAATCCATGAATGGCCCCTTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
JMSF022P23+ TCTTCCGAATCCATGAATGGCCCCTTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
____________________________________________________________
consensus TCTTCCGAATCCATGAATGCCCCCCTCCTCTGCTTCCCTTCTCTGGCCTCCTCTATAGCC
. : . : . : . : . : . :
JMFS032F08+ GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMFS039D03+ GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMFN004B09+ GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMSF003M10+ GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMSF007D10+ TCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMSF036J03+ GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
JMSF014M19+ GAGACAGAGCAATC-------GGAAAACCAAAATAAATAGCCGGGTACGATCTTCGGCGC
JMSF022P23+ GAGACAGAGCAATC-------GGAAAACCAAAATAAATAGCCGGGTACGATCTTCGGCGC
____________________________________________________________
consensus GAGGCAGAGCAATCGGAAATAGGAAAACCAAAATAAATAGCCGAGTACGATCTTCGGCGC
. : . : . : . : . : . :
JMFS032F08+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMFS039D03+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMFN004B09+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMSF003M10+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMSF007D10+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMSF036J03+ CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
JMSF014M19+ CGACTTAAAAATTTAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTCTC
JMSF022P23+ CGACTTAAAAATTTAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTCTC
____________________________________________________________
consensus CGACTTAAAAATTAAATCCGTTGAAGATTTTCTTACAAATTAAATCCGTTGGAGATTTTC
. : . : . : . : . : . :
JMFS032F08+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMFS039D03+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMFN004B09+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMSF003M10+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMSF007D10+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMSF036J03+ ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMSF014M19+ TTACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
JMSF022P23+ TTACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
____________________________________________________________
consensus ATACAAATTTTAATCCGTTGGGAGATTTTCTTGAAATTTTAATCCGTTGGAGATTTTTAT
. : . : . : . : . : . :
JMFS032F08+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMFS039D03+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMFN004B09+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMSF003M10+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMSF007D10+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMSF036J03+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMSF014M19+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
JMSF022P23+ AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
____________________________________________________________
consensus AAAAATTTAATTCGTCGGAGATTTTGAAATTTAAAGCCGGCGAAGGGAAGGAATCGGAGG
. : . : . : . : . : . :
JMFS032F08+ AGATTTGAGACAGTTTAGAGAGAGATGAGAACGTA
JMFS039D03+ AGATTTGAGACAGTTTAGAGAGAGATGAGAACGTACAGTGTG
JMFN004B09+ AGATTTGAGACAGTTTAGAGAGAGATGAGAACGTACAGTG
JMSF003M10+ AGATTTGAGACAGTTTAGAGAGAGATGAGAAC
JMSF007D10+ AGATTTGAGACAGTTTAGAGAGAGATGAGAAC
JMSF036J03+ AGATTTGAGACAGTTTAGAGAGAGATGAGAACGTACAGTGTGGTCTGCCTGTCC
JMSF014M19+ AGATTTTAGATAGTTTAGAGAGAGATGAGAGCGTACAGTGTGGTCTGCCTGTCC
JMSF022P23+ AGATTTTAGATAGTTTAGAGAGAGATGAGAGCGTACAGTGTGGTCTGCCTGTCCGAAGTC
____________________________________________________________
consensus AGATTTGAGACAGTTTAGAGAGAGATGAGAACGTACAGTGTGGTCTGCCTGTCCGAAGTC