Contig 006513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS134F08Sequence641006513 (5)ref|XP_009778973.1|9e-93PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana
JMFS158D08Sequence435006513 (5)ref|XP_009778973.1|4e-52PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana
JMSF014H03Sequence247006513 (5)788005647 (4)ref|XP_009778974.1|3e-47PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana
JMSF022J22Sequence655006513 (5)ref|XP_009778973.1|5e-91PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana 798005647 (4)ref|XP_009778974.1|2e-50PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana
JMSF051N15Sequence671006513 (5)ref|XP_009778973.1|1e-96PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana 768005647 (4)ref|XP_009778974.1|7e-41PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana

Alignment

This contig is upended


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JMSF051N15+                                                            AGACTACCCAC
                      ____________________________________________________________
consensus                                                              AGACTACCCAC
 
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JMFS134F08+           CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
JMSF051N15+           CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
JMSF022J22+                ATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTNGTATGTGTGT
                      ____________________________________________________________
consensus             CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
 
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JMFS134F08+           ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
JMSF051N15+           ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
JMSF022J22+           ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
                      ____________________________________________________________
consensus             ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
 
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JMFS158D08+                                                         TGTGTCCACTAAGC
JMFS134F08+           AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
JMSF051N15+           AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
JMSF022J22+           AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
                      ____________________________________________________________
consensus             AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
 
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JMFS158D08+           GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMFS134F08+           GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMSF051N15+           GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMSF022J22+           GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
                      ____________________________________________________________
consensus             GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
 
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JMFS158D08+           GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMFS134F08+           GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMSF051N15+           GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMSF022J22+           GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
                      ____________________________________________________________
consensus             GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
 
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JMFS158D08+           GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMFS134F08+           GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMSF051N15+           GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMSF022J22+           GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
                      ____________________________________________________________
consensus             GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
 
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JMFS158D08+           CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMFS134F08+           CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMSF051N15+           CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMSF014H03+                                                                ATTCCCG
JMSF022J22+           CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
                      ____________________________________________________________
consensus             CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
 
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JMFS158D08+           GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMFS134F08+           GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF051N15+           GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF014H03+           GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF022J22+           GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
                      ____________________________________________________________
consensus             GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
 
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JMFS158D08+           AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMFS134F08+           AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF051N15+           AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF014H03+           AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF022J22+           AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
                      ____________________________________________________________
consensus             AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
 
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JMFS158D08+           AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMFS134F08+           AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF051N15+           AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF014H03+           AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF022J22+           AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
                      ____________________________________________________________
consensus             AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
 
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JMFS158D08+           T                                                           
JMFS134F08+           TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTG                   
JMSF051N15+           TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
JMSF014H03+           TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
JMSF022J22+           TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
                      ____________________________________________________________
consensus             TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC