Contig 006510:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022D06Sequence660006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]606006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]
JMSF022D07Sequence655006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]603006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]
JMSF023D07Sequence649006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]603006510 (6)ref|XP_009766670.1|124PREDICTED: uncharacterized protein LOC104217992 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF023D07+          GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
rJMSF022D06+          GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
rJMSF022D07+          GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
JMSF023D07-           GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
JMSF022D07-           GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
JMSF022D06-           GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
                      ____________________________________________________________
consensus             GAGAAAACTCATCATACAGAGTACAAGAAAAGACTACATTCTCTTCTCATTCTGCCCTGT
 
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rJMSF023D07+          TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
rJMSF022D06+          TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
rJMSF022D07+          TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
JMSF023D07-           TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
JMSF022D07-           TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
JMSF022D06-           TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
                      ____________________________________________________________
consensus             TTAAGGTAGTACAGATTGAGGATCAATGGCTGCTGTTCCATGCTGTGTTTCATCAACTGT
 
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rJMSF023D07+          TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
rJMSF022D06+          TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
rJMSF022D07+          TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
JMSF023D07-           TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
JMSF022D07-           TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
JMSF022D06-           TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
                      ____________________________________________________________
consensus             TGTGGCAATCTGCAAATCTGCTCCAACCAGAAGGGGAAAGCCAGCTGCTAACAGAGTTTT
 
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rJMSF023D07+          GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
rJMSF022D06+          GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
rJMSF022D07+          GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
JMSF023D07-           GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
JMSF022D07-           GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
JMSF022D06-           GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
                      ____________________________________________________________
consensus             GGTGAGATCAGGCAGTCATGTTTCAAGCAATAATATGTCTATGCAAGAATCATCATCATC
 
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rJMSF023D07+          ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
rJMSF022D06+          ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
rJMSF022D07+          ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
JMSF023D07-           ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
JMSF022D07-           ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
JMSF022D06-           ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
                      ____________________________________________________________
consensus             ATCTGAGAACAAGATTAAGGTTTTTGAGGACAAATCAAAGGGTATTGTTTGTTACAGAGA
 
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rJMSF023D07+          TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
rJMSF022D06+          TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
rJMSF022D07+          TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
JMSF023D07-           TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
JMSF022D07-           TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
JMSF022D06-           TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
                      ____________________________________________________________
consensus             TGAGAATGGGGAGATAACATGTGAAGGGTACGACGAAGGGCCTAGATTTTGCCAGCAATT
 
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rJMSF023D07+          TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
rJMSF022D06+          TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
rJMSF022D07+          TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
JMSF023D07-           TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
JMSF022D07-           TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
JMSF022D06-           TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
                      ____________________________________________________________
consensus             TTCTAAGTTTTCCTGTAATTCCAGGGAATCGGAGATCATTGATCTTCTGCAAAGATGCTG
 
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rJMSF023D07+          GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
rJMSF022D06+          GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
rJMSF022D07+          GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
JMSF023D07-           GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
JMSF022D07-           GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
JMSF022D06-           GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
                      ____________________________________________________________
consensus             GCTTCAAGTCATTGATGGTGCTGAAATGTAATAACCATTGGAAACAAAGGGCTTATTGGG
 
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rJMSF023D07+          CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
rJMSF022D06+          CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
rJMSF022D07+          CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
JMSF023D07-           CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
JMSF022D07-           CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
JMSF022D06-           CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
                      ____________________________________________________________
consensus             CAAAACAGACTTGTGAATGAAAACTTCCATTTTGGATCACAGGCAAAAAACAACACCAAT
 
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rJMSF023D07+          GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
rJMSF022D06+          GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
rJMSF022D07+          GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
JMSF023D07-           GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
JMSF022D07-           GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
JMSF022D06-           GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
                      ____________________________________________________________
consensus             GGCTTCTTTGATTCTCATAGTTTATGATTACATCTCTATTTTCTCTTCTCTTCTCTTCTA
 
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rJMSF023D07+          CTT                                                         
rJMSF022D06+          CTT                                                         
rJMSF022D07+          CTT                                                         
JMSF023D07-           CTTTGTACAAGATGTAAAATAAATGCCACTGAAGATTGATGTTCATGTA           
JMSF022D07-           CTTTGTACAAGATGTAAAATAAATGCCACTGAAGATTGATGTTCATGTA           
JMSF022D06-           CTTTGTACAAGATGTAAAATAAATGCCACTGAAGATTGATGTTCATGTACNAAAAAAAAA
                      ____________________________________________________________
consensus             CTTTGTACAAGATGTAAAATAAATGCCACTGAAGATTGATGTTCATGTACNAAAAAAAAA