clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011E15 | Sequence | 521 | 006509 (8) | ref|XP_009769365.1| | 1e-31 | PREDICTED: receptor-like protein 12 [Nicotiana sylvestris] | 170 | 015900 | |||
JMFN043E11 | Sequence | 620 | 006509 (8) | ref|XP_009769365.1| | 3e-34 | PREDICTED: receptor-like protein 12 [Nicotiana sylvestris] | |||||
JMFS128G01 | Sequence | 626 | 006509 (8) | ref|XP_009769365.1| | 6e-31 | PREDICTED: receptor-like protein 12 [Nicotiana sylvestris] | |||||
JMSF005P06 | Sequence | 309 | 006509 (8) | ref|XP_009769365.1| | 2e-29 | PREDICTED: receptor-like protein 12 [Nicotiana sylvestris] | 299 | 011337 (2) | ref|XP_006364902.1| | 6e-40 | PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum |
JMSF022C19 | Sequence | 677 | 006509 (8) | ref|NP_001234474.1| | 4e-47 | verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g | |||||
JMSF024I08 | Sequence | 650 | 006509 (8) | ref|NP_001234474.1| | 4e-49 | verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g | 742 | 024575 | ref|XP_011080811.1| | 1e-39 | PREDICTED: LOW QUALITY PROTEIN: receptor-like protein 12 [Sesamum indicum] |
JMSF032J08 | Sequence | 688 | 006509 (8) | ref|NP_001234474.1| | 4e-47 | verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g | 601 | 008601 (2) | gb|AAY42203.1| | 6e-22 | verticillium wilt disease resistance protein [Solanum torvum] |
JMSF038C10 | Sequence | 656 | 006509 (8) | ref|NP_001234474.1| | 3e-47 | verticillium wilt disease resistance protein precursor [Solanum lycopersicum] g | 598 | 008601 (2) | gb|AAY42203.1| | 2e-19 | verticillium wilt disease resistance protein [Solanum torvum] |
This contig is upended
. : . : . : . : . : . :
JMSF024I08+ TCTCTTGGAAATTCTCCCTGCAGGTTACAAACACCAAGGCTCAA
____________________________________________________________
consensus TCTCTTGGAAATTCTCCCTGCAGGTTACAAACACCAAGGCTCAA
. : . : . : . : . : . :
JMSF024I08+ GGTCTTCAGGTTAGAGAAATTGGATAAGAATTTTGGATGTACTACTGTACTGGAAAGATC
JMSF038C10+ GAGAAATTGGCTAAGAATTTTGGAAGTACTACTGTACTGGAAAGATC
JMSF032J08+ GAGAAATTGGCTAAGAATTTTGGAAGTACTACTGTACTGGAAAGATC
JMSF022C19+ ACTACTGTACTGGAAAGATC
____________________________________________________________
consensus GGTCTTCAGGTTAGAGAAATTGGCTAAGAATTTTGGAAGTACTACTGTACTGGAAAGATC
. : . : . : . : . : . :
JMSF024I08+ AACACCATCAAGATAAAGTTGTCTAAGTTGAGTGGAGTTCTCAAAGAATTGGTTTAGATT
JMSF038C10+ AACACCATCAAGATAAAGATGTCCAAGTTGAGTCGAGTTCTCAAAGAATTGGTTTAGATT
JMSF032J08+ AACACCATCAAGATAAAGATGTCCAAGTTGAGTCGAGTTCTCAAAGAATTGGTTTAGATT
JMSF022C19+ AACACCATCAAGATAAAGATGTCCAAGTTGAGTCGAGTTCTCAAAGAATTGGTTTAGATT
____________________________________________________________
consensus AACACCATCAAGATAAAGATGTCCAAGTTGAGTCGAGTTCTCAAAGAATTGGTTTAGATT
. : . : . : . : . : . :
JMSF024I08+ TGGAATCTCAAGATCAAGAT---------------TTGAGAGCTCAAGAGTTACCAACCT
JMFS128G01+ CCT
JMSF038C10+ TGGAATCTCAAGATTAAAATCCCAACTGGGATTAGTTGAGAGGTCAAGAGTTACCAACCT
JMFN043E11+ CCT
JMSF032J08+ TGGAATCTCAAGATTAAAATCCCAACTGGGATTAGTTGAGAGGTCAAGAGTTACCAACCT
JMSF022C19+ TGGAATCTCAAGATTAAAATCCCAACTGGGATTAGTTGAGAGGTCAAGAGTTACCAACCT
____________________________________________________________
consensus TGGAATCTCAAGATTAAAATCCCAACTGGGATTAGTTGAGAGGTCAAGAGTTACCAACCT
. : . : . : . : . : . :
JMSF024I08+ TGTGAGTCTTGATATTCCATTCGGGATCTGCCCTCCAAACCAAGCATTTGACAAATTGAG
JMFS128G01+ TGTGAGTCTTGATATTCCATTCGGGATCTGCCCTCCAAACCAAGCATTTGACAAATTGAG
JMSF038C10+ TGTGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTGACAAATTGAG
JMFN043E11+ TGTGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTGACAAATTGAG
JMSF032J08+ TGTGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTGACAAATTGAG
JMFF011E15+ TGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTTACAAATTGAG
JMSF022C19+ TGTGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTGACAAATTGAG
____________________________________________________________
consensus TGTGAGTCTTGATATTCCATTCGGGATAAGCCCTTCAAACCAAGCATTTGACAAATTGAG
. : . : . : . : . : . :
JMSF024I08+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTCGAGTGGAATTGAAGTCGTT
JMSF005P06+ TGAACTGGAATTCGAGTGGAATTGAAGTCGTT
JMFS128G01+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTCGAGTGGAATTGAAGTCGTT
JMSF038C10+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
JMFN043E11+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
JMSF032J08+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
JMFF011E15+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
JMSF022C19+ GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
____________________________________________________________
consensus GTATGTCAAGTTGGTAAGATTATAGATCTGAACTGGAATTGGAGTGGAATTGAAGTCGTT
. : . : . : . : . : . :
JMSF024I08+ GAAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMSF005P06+ GAAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMFS128G01+ GAAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMSF038C10+ GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMFN043E11+ GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMSF032J08+ GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMFF011E15+ GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
JMSF022C19+ GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
____________________________________________________________
consensus GGAAGCCAAATTTAGGGTCTCAAGATATTGAAGACTGAATAGAGCACTTGAACTGTGAAT
. : . : . : . : . : . :
JMSF024I08+ ACCATCTGCTCTAATGGATTCATCGTCGAGAATCAAGCTGACGACATGACCTGAGGTGTC
JMSF005P06+ ACCATCTGCTCTAATGGATTCATCGTCGAGAATCAAGCTGACGACATGACCTGAGGTGTC
JMFS128G01+ ACCATCTGCTCTAATGGATTCATCGTCGAGAATCAAGCTGACGACATGACCTGAGGTGTC
JMSF038C10+ ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
JMFN043E11+ ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
JMSF032J08+ ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
JMFF011E15+ ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
JMSF022C19+ ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
____________________________________________________________
consensus ACCATTTGTAAAAATCCCTTCATTGTCGAGAATCAAGCTGATGACATGACCTGAGGTGTC
. : . : . : . : . : . :
JMSF024I08+ ACATTCCACACCAGGCCAAACACAACAGTCGTCGTGTGTGCTGTGGTTCCAGCGCGCAAG
JMSF005P06+ ACATTCCACACCAGGCCAAACACAACAGTCGTCGTGTGTGCTGTGGTTCCAGCGCGCAAG
JMFS128G01+ ACATTCCACACCAGGCCAAACACAACAGTCGTCGTGTGTGCTGTGGTTCCAGCGCGCAAG
JMSF038C10+ ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
JMFN043E11+ ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
JMSF032J08+ ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
JMFF011E15+ ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
JMSF022C19+ ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
____________________________________________________________
consensus ACATTCCACCCCAGCCCAAACACAACAGTTGTC---TGTGCTGTGGTTCCAGCGCGCAAG
. : . : . : . : . : . :
JMSF024I08+ CTTGGTTGAATATATTGGGTCGAACTTGAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMSF005P06+ CTTGGTTGAATATATTGGGTCGAACTTGAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMFS128G01+ CTTGGTTGAATATATTGGGTCGAACTTGAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMSF038C10+ CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMFN043E11+ CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMSF032J08+ CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMFF011E15+ CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
JMSF022C19+ CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
____________________________________________________________
consensus CTTGGTTGAAGCTGTTGAGTCGAACACTAGGCTGCTGCGGAACTGCAACAACAACATTTT
. : . : . : . : . : . :
JMSF024I08+ CTGATGGCTCAAGCATTGGGCCTGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMSF005P06+ CTGATGGCTCAAGCATTGGGCCTGGGCTTGGGCTGCC
JMFS128G01+ CTGATGGCTCAAGCATTGGGCCTGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMSF038C10+ CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMFN043E11+ CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMSF032J08+ CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMFF011E15+ CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
JMSF022C19+ CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
____________________________________________________________
consensus CTGATGGCTCAAGCATTGGGCTGGGGCTTGGGCTGCCACCATTTGGAGCAGCAAGCAGGA
. : . : . : . : . : . :
JMSF024I08+ GGATATGAAGAAGAAAAGGC
JMFS128G01+ GGATATGAAGAAGAAAAGGCGGCATTCAAGGAGTGGAGTTTTCATT
JMSF038C10+ GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
JMFN043E11+ GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
JMSF032J08+ GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
JMFF011E15+ GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
JMSF022C19+ GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
____________________________________________________________
consensus GGATATGAAGAAGAAAAGGCGGTATTCAAGGACTGGAGTTTTCATTGCACAAACAAAGTT
. : . : . : . : . : . :
JMSF038C10+ TAAGGC
JMFN043E11+ TAAGGCTCAATCTATCACAATTTTGGGATGCTTTGAA
JMSF032J08+ TAAGGCTCAATCTATCACAATTTTGGGATGCTTTGAA
JMFF011E15+ TAAGGCTCAATCTATCACAATTTTGGGATGCTTTGAACTTT
JMSF022C19+ TAAGGCTCAATCTATCACAATTTTGGGATGCTTTGAACTTTGAAGTGAAGTGAATGCATC
____________________________________________________________
consensus TAAGGCTCAATCTATCACAATTTTGGGATGCTTTGAACTTTGAAGTGAAGTGAATGCATC