| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050C06 | Sequence | 506 | 006506 (6) | ref|XP_009588232.1| | 1e-92 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to | 390 | 006506 (6) | ref|XP_009588232.1| | 1e-20 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to |
| JMFF051I15 | Sequence | 561 | 006506 (6) | ref|XP_009588232.1| | 3e-96 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to | 545 | 003310 (8) | ref|XP_009613873.1| | 1e-53 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial |
| JMFN036C08 | Sequence | 630 | 006506 (6) | ref|XP_009588232.1| | 2e-123 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to | |||||
| JMSF021N05 | Sequence | 670 | 006506 (6) | ref|XP_009588232.1| | 8e-124 | PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Nicotiana to | 709 | 006506 (6) | ref|XP_006426363.1| | 1e-89 | hypothetical protein CICLE_v100264431mg [Citrus clementina] gb|ESR39603.1| hypot |
This contig is upended
. : . : . : . : . : . :
rJMFF050C06- ACAAAT
rJMSF021N05- CGATTGACTTGGTTCATACTAATATCTACAAAT
____________________________________________________________
consensus CGATTGACTTGGTTCATACTAATATCTACAAAT
. : . : . : . : . : . :
rJMFF050C06- TTATGTAAAACATACATGTAATACTTTTGAACAAAATATAGTATTTTACATATAAGATCG
rJMSF021N05- TTATGTAAAACATACATGTAATACTTTTGAACAAAATATAGTATTTTACATATAAGATCG
____________________________________________________________
consensus TTATGTAAAACATACATGTAATACTTTTGAACAAAATATAGTATTTTACATATAAGATCG
. : . : . : . : . : . :
rJMFF050C06- ATAGAAAATAGTACACGTCCCATAAAATGGTATTTGTGCTCTCTCACAAAACTATCTGAT
rJMSF021N05- ATAGAAAATAGTACACGTCCCATAAAATGGTATTTGTGCTCTCTCACAAAACTATCTGAT
____________________________________________________________
consensus ATAGAAAATAGTACACGTCCCATAAAATGGTATTTGTGCTCTCTCACAAAACTATCTGAT
. : . : . : . : . : . :
rJMFF050C06- CTGTTCATTCAAATAGGCATTTGCTGTTGGGAATTTTGTGGCAATGAAATTAAAGCTTCT
rJMSF021N05- CTGTTCATTCAAATAGGCATTTGCTGTTGGGAATTTTGTGGCAATGAAATTAAAGCTTCT
____________________________________________________________
consensus CTGTTCATTCAAATAGGCATTTGCTGTTGGGAATTTTGTGGCAATGAAATTAAAGCTTCT
. : . : . : . : . : . :
rJMFF050C06- TTTGATTGTATATCTGCGGGCACTACAGTTTTGTGCCTCCGCCATCTGATATCAAAAATG
rJMSF021N05- TTTGATTGTATATCTGCGGGCACTACAGTTTTGTGCCTCCGCCATCTGATATCAGAGATG
JMSF021N05+ ATG
____________________________________________________________
consensus TTTGATTGTATATCTGCGGGCACTACAGTTTTGTGCCTCCGCCATCTGATATCAGAGATG
. : . : . : . : . : . :
rJMFF050C06- CAGCAGCTGCGGCGGCGGTAGGAACCACCCCTGTTGAGTTGCCTGGTTTTGACAAATGGA
rJMSF021N05- CAGCAGCTGCGGCGGCGGTAGGAACCACCCCTGTTGAGTTGCCTGGTTTTGACAAATGGA
JMFN036C08+ GCGGCGGCGGTAGGAACCACCCCTGTTGAGTTGCCTGGTTTTGACAAATGGA
JMSF021N05+ CAGCAGCTGCGGCGGCGGTAGGAACCACCCCTGTTGAGTTGCCTGGTTTTGACAAATGGA
____________________________________________________________
consensus CAGCAGCTGCGGCGGCGGTAGGAACCACCCCTGTTGAGTTGCCTGGTTTTGACAAATGGA
. : . : . : . : . : . :
rJMFF050C06- GGAGCGGTGCAAGATATTCACAAAATGATGATACAGCAGCAGCAACTTCTGAGTAGTTTT
rJMSF021N05- GGAGCGGTGCAAGATATTCACAAAATGATGATACAGCAGCAGCAACTTCTGAGTAGTTTT
JMFN036C08+ GGAGCGGTGCAAGATATTCACAAAATGATGATACAGCAGCAGCAACTTCTGAGTAGTTTT
JMFF051I15+ TGATACAGCAGCAGCAACTTCTGAGTAGTTTT
JMSF021N05+ GGAGCGGTGCAAGATATTCACAAAATGATGATACAGCAGCAGCAACTTCTGAGTAGTTTT
____________________________________________________________
consensus GGAGCGGTGCAAGATATTCACAAAATGATGATACAGCAGCAGCAACTTCTGAGTAGTTTT
. : . : . : . : . : . :
rJMFF050C06- CGGATGATGAGGGTGCTGTCACTT
rJMSF021N05- CGGATGATGAGGGTGCTGTCACTTCGACTAGCTGTATGCCCGGTGTTACAGGTACAGCCT
JMFN036C08+ CGGATGATGAGGGTGCTGTCACTTCGACTAGCTGTATGCCCGGTGTTACAGGTACAGCCT
JMFF051I15+ CGGATGATGAGGGTGCTGTCACTTCGACTAGCTGTATGCCCGGTGTTACAGGTACAGCCT
JMFF050C06+ AGCTGTATGCCCGGTGTTACAGGTACAGCTT
JMSF021N05+ CGGATGATGAGGGTGCTGTCACTTCGACTAGCTGTATGCCCGGTGTTACAGGTACAGCCT
____________________________________________________________
consensus CGGATGATGAGGGTGCTGTCACTTCGACTAGCTGTATGCCCGGTGTTACAGGTACAGCCT
. : . : . : . : . : . :
rJMSF021N05- CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
JMFN036C08+ CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
JMFF051I15+ CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
JMFF050C06+ CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
JMSF021N05+ CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
____________________________________________________________
consensus CGTCTGTGGCATGCAGCTTCAGCATCTTATTTATAGATGACACCGTGACAGTTATCTGGG
. : . : . : . : . : . :
rJMSF021N05- CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTCGTGGTCTAGTTTATAGC
JMFN036C08+ CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTTGTGGTCTAGTTTATAGC
JMFF051I15+ CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTCGTGGTCTAGTTTATAGC
JMFF050C06+ CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTCGTGGTCTAGTTTATAGC
JMSF021N05+ CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTCGTGGTCTAGTTTATAGC
____________________________________________________________
consensus CACCTCTTTGGAAATGGAAGGCAAAACCAACTCTCAAGAGCTCGTGGTCTAGTTTATAGC
. : . : . : . : . : . :
rJMSF021N05- CAAGTGAATTAAGAATCCGGAGTGCATTCTTGGTCACCTTACTTTCCACCACAGGCCTCA
JMFN036C08+ CAAGTGAATTAAGAATCCGGAGTGCATTCTTGCTCACCTTACTTTCCACCACAGGCCTCA
JMFF051I15+ CAAGTGAATTAAGAATCCGGAGTGCATTCTTGCTCACCTTACTTTCCACCACAGGCCTCA
JMFF050C06+ CAAGTGAATTAAGAATCCGGAGTGCATTCTTGCTCACCTTACTTTCCACCACAGGCCTCA
JMSF021N05+ CAAGTGAATTAAGAATCCGGAGTGCATTCTTGGTCACCTTACTTTCCACCACAGGCCTCA
____________________________________________________________
consensus CAAGTGAATTAAGAATCCGGAGTGCATTCTTGGTCACCTTACTTTCCACCACAGGCCTCA
. : . : . : . : . : . :
rJMSF021N05- CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
JMFN036C08+ CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
JMFF051I15+ CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
JMFF050C06+ CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
JMSF021N05+ CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
____________________________________________________________
consensus CCAGGACTGAGATCTGATCAGCAACAGCACCTCTCATTGCACCACCCACATGTCGAACAG
. : . : . : . : . : . :
rJMSF021N05- TCCATGTGGGTTCAGA
JMFN036C08+ TCCATGTGGGTTCAGATTGTTCAAGATCACATATGAGGCGAATTTCCGACGACACTAACC
JMFF051I15+ TCCATGTGGGTTCAGATTGTTCAAGATCACATATGAGGCGAATTTCCGACGACACTAACC
JMFF050C06+ TCCATGTGGGTTCAGATTGTTCAAGATCACATATGAGGCGAATTTCCGACGACACTAACC
JMSF021N05+ TCCATGTGGGTTCAGATTGTTCAAGATCACATATGAGGCGAATTTCCGACGACACTAACC
____________________________________________________________
consensus TCCATGTGGGTTCAGATTGTTCAAGATCACATATGAGGCGAATTTCCGACGACACTAACC
. : . : . : . : . : . :
JMFN036C08+ CTAGGTTTGCAACGCTTTTGAGGCATAATTCATGTATGCATAGCCTTTCTTTACGAACAC
JMFF051I15+ CTAGGTTTGCAACGCTTTTGAGGCATAATTCATGTATGCATAGCCTTTCTTTACGAGTAC
JMFF050C06+ CTAGGTTTGCAACGCTTTTGAGGCATAATTCATGTATGCATAGCCTTTCTTTACGAACAC
JMSF021N05+ CTAGGTTTGCAACGCTTTTGAGGCATAATTCATGTATGCATAGCCTTTCTTTACGAACAC
____________________________________________________________
consensus CTAGGTTTGCAACGCTTTTGAGGCATAATTCATGTATGCATAGCCTTTCTTTACGAACAC
. : . : . : . : . : . :
JMFN036C08+ CACAAAGTCCGTGAAGTAGAATCTCAAGAGCCTCA
JMFF051I15+ CACAAAGTCCGTGAAGTAGAATCTCAAGAGCCTCAGTAGTTTGCGTGTTCGTATGATTCC
JMFF050C06+ CACAAAGTCCGTGAAGTAGAATCTCAAGAGCCTCAACATGTTGCGTCTCGATA--ATTCC
JMSF021N05+ CACAAAGTCCGTGAAGTAGAATCTCAAGAGCCTCAACATGTTGCGTCTCGATA--ATTCC
____________________________________________________________
consensus CACAAAGTCCGTGAAGTAGAATCTCAAGAGCCTCAACATGTTGCGTCTCGATA--ATTCC
. : . : . : . : . : . :
JMFF051I15+ CTGAACTACGCACTCCATTGTCAGTCGCCGAGACCCGAACAATCTGCCC
JMFF050C06+ CTGAACTACGCACTCCATTCTCAGTCGCCGAGACCCGAACAATCTGCCCTAACACC
JMSF021N05+ CTGAACTACGCACTCCATTCTCAGTCGCCGAGACCCGAACAATCTGCCCTAGCACCGTTC
____________________________________________________________
consensus CTGAACTACGCACTCCATTCTCAGTCGCCGAGACCCGAACAATCTGCCCTAGCACCGTTC