Contig 006504:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN032B03Sequence623006504 (2)ref|XP_009765049.1|8e-73PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Nicotia
JMSF021K20Sequence688006504 (2)ref|XP_009765050.1|9e-23PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Nicotia

Alignment

This contig is upended


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JMFN032B03+                                                              GATGTCGAA
                      ____________________________________________________________
consensus                                                                GATGTCGAA
 
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JMFN032B03+           AGAGTCTGTGAAGACCTTTCCCCGAGACATCCAATCATTCTTCCCTTGATGCAGGATCTA
                      ____________________________________________________________
consensus             AGAGTCTGTGAAGACCTTTCCCCGAGACATCCAATCATTCTTCCCTTGATGCAGGATCTA
 
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JMFN032B03+           CCCCCGCAGATGGGCTATCAGCAAAGTACTCTTGGTGTTTGACATTAACACCATACTCTC
                      ____________________________________________________________
consensus             CCCCCGCAGATGGGCTATCAGCAAAGTACTCTTGGTGTTTGACATTAACACCATACTCTC
 
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JMFN032B03+           GTAGAGCTTTTGAAAGATCATCCATTGTCAAGATTAAGCGTTTATCCTTTTGCTGCTTAT
                      ____________________________________________________________
consensus             GTAGAGCTTTTGAAAGATCATCCATTGTCAAGATTAAGCGTTTATCCTTTTGCTGCTTAT
 
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JMFN032B03+           CTCGTTTATCTTTGACAATGCCAGCTGTTCTTGCCTTGCACTGCTGAAGAGCATCAGTGG
                      ____________________________________________________________
consensus             CTCGTTTATCTTTGACAATGCCAGCTGTTCTTGCCTTGCACTGCTGAAGAGCATCAGTGG
 
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JMFN032B03+           CAACATCTGCAATAAATTTCTGTGTAGCAACTGCAACCAGCCTAATTAATCGAACATCAG
JMSF021K20+                                                         TAATCGAACATCAG
                      ____________________________________________________________
consensus             CAACATCTGCAATAAATTTCTGTGTAGCAACTGCAACCAGCCTAATTAATCGAACATCAG
 
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JMFN032B03+           GACATTGGAACCCGCTTTTAGCCAAGTAATGCTCCACTAATTCATCAGGAATTGTGGGAG
JMSF021K20+           GACATTGGAACCCGCTTTTAGCCAAGTAATGCTCCACTAATTCATCAGGAATTGTGGGAG
                      ____________________________________________________________
consensus             GACATTGGAACCCGCTTTTAGCCAAGTAATGCTCCACTAATTCATCAGGAATTGTGGGAG
 
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JMFN032B03+           TATAATCCATCAATGAAGTGAGGAAGTCAGCGATGGCAGTATCATCGTCGTGTCTTCCTT
JMSF021K20+           TATAATCCATCAATGAAGTGAGGAAGTCAGCGATGGCAGTATCATCATCGTGTCTTCCTT
                      ____________________________________________________________
consensus             TATAATCCATCAATGAAGTGAGGAAGTCAGCGATGGCAGTATCATCGTCGTGTCTTCCTT
 
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JMFN032B03+           CAGGCTGTTGTTGACCCTGACTACTATGGTTCATCTTTCTCACACCAAGATTAAGTTCCA
JMSF021K20+           CAGGCTATTGTTGACCCTGACTAGTATGGTTCATCTTTCTCACACCAAGATTAAGTTCCA
                      ____________________________________________________________
consensus             CAGGCTGTTGTTGACCCTGACTAGTATGGTTCATCTTTCTCACACCAAGATTAAGTTCCA
 
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JMFN032B03+           CAAGTT                                                      
JMSF021K20+           CAAGTTACTTCAATTCCCAGGTTGAAACCTAGTCCGAAACAGCTATCATCTGCTCAAAAT
                      ____________________________________________________________
consensus             CAAGTTACTTCAATTCCCAGGTTGAAACCTAGTCCGAAACAGCTATCATCTGCTCAAAAT
 
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JMSF021K20+           GAAAACAGATATCAGCAATCTCTGTCTAAACAGAGCTAATTGTAGTTTATATACTAAAAA
                      ____________________________________________________________
consensus             GAAAACAGATATCAGCAATCTCTGTCTAAACAGAGCTAATTGTAGTTTATATACTAAAAA
 
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JMSF021K20+           ACTTATCGTATTAGCAATAGTGGAACCGGCAGCGGCGGCTGAGAACCACAGTGGCGGTGG
                      ____________________________________________________________
consensus             ACTTATCGTATTAGCAATAGTGGAACCGGCAGCGGCGGCTGAGAACCACAGTGGCGGTGG
 
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JMSF021K20+           CGACGTCAGTGGCAGGCGTCGTCGACAGTACGTGGCAGGCGTCGTCGACAGTACTTGGAG
                      ____________________________________________________________
consensus             CGACGTCAGTGGCAGGCGTCGTCGACAGTACGTGGCAGGCGTCGTCGACAGTACTTGGAG
 
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JMSF021K20+           GCGTCGTTTTCAGCTGGGTCTAGTCACCGGTAGCTAATGAGAAGAAGAGGGGCGTCATGG
                      ____________________________________________________________
consensus             GCGTCGTTTTCAGCTGGGTCTAGTCACCGGTAGCTAATGAGAAGAAGAGGGGCGTCATGG
 
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JMSF021K20+           GTGGCTGATGAGAGTGGCGCTTGAATCCTTAGCTTGGTGTCGGCAGCGGCGTTTGATCGG
                      ____________________________________________________________
consensus             GTGGCTGATGAGAGTGGCGCTTGAATCCTTAGCTTGGTGTCGGCAGCGGCGTTTGATCGG
 
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JMSF021K20+           GGCTGAGGGAATCGTGGTGAGAGAGGCGGTGTCGACGGCGGAGTTGCGGTCTGTGGTGAG
                      ____________________________________________________________
consensus             GGCTGAGGGAATCGTGGTGAGAGAGGCGGTGTCGACGGCGGAGTTGCGGTCTGTGGTGAG
 
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JMSF021K20+           GAGCGACGGCGGAGTTGCGGTCTGTGGTGAGGAGCGACGGCGGAGAGTGTTGGAGAGGTC
                      ____________________________________________________________
consensus             GAGCGACGGCGGAGTTGCGGTCTGTGGTGAGGAGCGACGGCGGAGAGTGTTGGAGAGGTC