Contig 006496:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020L05Sequence665006496 (2)ref|XP_009630908.1|2e-46PREDICTED: rop guanine nucleotide exchange factor 1 isoform X1 [Nicotiana tomen763008658 (3)ref|XP_004231073.1|2e-100PREDICTED: rop guanine nucleotide exchange factor 1 [Solanum lycopersicum]
JMSF047M04Sequence688006496 (2)ref|XP_009794967.1|2e-79PREDICTED: rop guanine nucleotide exchange factor 1 isoform X1 [Nicotiana sylve758008658 (3)ref|XP_004231073.1|2e-86PREDICTED: rop guanine nucleotide exchange factor 1 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF047M04+                                       TTCAAGTGTAAATCAGAGCGCGGCTGTGTAGC
                      ____________________________________________________________
consensus                                         TTCAAGTGTAAATCAGAGCGCGGCTGTGTAGC
 
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JMSF047M04+           CATTACTTCATATGTGCCACCTCCAGGGAATGGCTGCGTTGAAGGCACAAACTCCACAAT
                      ____________________________________________________________
consensus             CATTACTTCATATGTGCCACCTCCAGGGAATGGCTGCGTTGAAGGCACAAACTCCACAAT
 
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JMSF047M04+           GGAATCACTCAGACATAAAAGCCACTCCATCTCTCTATACCACATATCCTTCTTCTGTGA
JMSF020L05+                                                                  TGTGA
                      ____________________________________________________________
consensus             GGAATCACTCAGACATAAAAGCCACTCCATCTCTCTATACCACATATCCTTCTTCTGTGA
 
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JMSF047M04+           AGGCAATGGCTCCAACCTCCAGAGTTCCCCAAATATAGTAGCAGAAAGATTTGTTATGGC
JMSF020L05+           AGGCAATGGCTCCAACCTCCAGAGTTCCCCAAATATAGTAGCAGAAAGATTTGTTATGGC
                      ____________________________________________________________
consensus             AGGCAATGGCTCCAACCTCCAGAGTTCCCCAAATATAGTAGCAGAAAGATTTGTTATGGC
 
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JMSF047M04+           ATTTGAGATTGCCAGTGCAGTACACACCCCTTTACCCCCTCCAGACATGTCCTCCCCGAG
JMSF020L05+           ATTTGAGATTGCCAGTGCAGTACACACCCCTTTACCCCCTCCAGACATGTCCTCCCCGAG
                      ____________________________________________________________
consensus             ATTTGAGATTGCCAGTGCAGTACACACCCCTTTACCCCCTCCAGACATGTCCTCCCCGAG
 
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JMSF047M04+           AAGAAGCTTAGCGAATCTCTCCTTCATCAATTCAATTTCGGATAAATCTGATTGACGATT
JMSF020L05+           AAGAAGCTTAGCGAATCTCTCCTTCATCAATTCAATTTCGGATAAATCTGATTGACGATT
                      ____________________________________________________________
consensus             AAGAAGCTTAGCGAATCTCTCCTTCATCAATTCAATTTCGGATAAATCTGATTGACGATT
 
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JMSF047M04+           CTGAGAGTTGTCATCCCAGAGCGACAGATCTTTCCCTCCAATCACGAAGGAAGGAGTCAA
JMSF020L05+           CTGAGAGTTGTCATCCCAGAGCGACAGATCTTTCCCTCCAATCACGAAGGAAGGAGTCAA
                      ____________________________________________________________
consensus             CTGAGAGTTGTCATCCCAGAGCGACAGATCTTTCCCTCCAATCACGAAGGAAGGAGTCAA
 
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JMSF047M04+           CGGCGGCAAGGGATTGGAAAAGATTCCGAACGGCGAAGAGGCTATAGAAGTGGATGCGTC
JMSF020L05+           CGGCGGCAAGGGATTGGAAAAGATTCCGAACGGCGAAGAGGCTATAGAAGTGGATGCGTC
                      ____________________________________________________________
consensus             CGGCGGCAAGGGATTGGAAAAGATTCCGAACGGCGAAGAGGCTATAGAAGTGGATGCGTC
 
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JMSF047M04+           AAAGCGCCGACAAGTGAAGCTACTAGAACAACTATCCGACTCGCTCACATCCGCACTGGG
JMSF020L05+           AAAGCGCCGACAAGTGAAGCTACTAGAACAACTATCCGACTCGCTCACATCCGCACTGGG
                      ____________________________________________________________
consensus             AAAGCGCCGACAAGTGAAGCTACTAGAACAACTATCCGACTCGCTCACATCCGCACTGGG
 
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JMSF047M04+           ACTGTAGCTCCCGCATCTCTCGCTCTGCCGATCGGACCCCGCTTCCGATGATACACTCCC
JMSF020L05+           ACTGTAGCTCCCGCATCTCTCGCTCTGCCGATCGGACCCCGCTTCCGATGATACACTCCC
                      ____________________________________________________________
consensus             ACTGTAGCTCCCGCATCTCTCGCTCTGCCGATCGGACCCCGCTTCCGATGATACACTCCC
 
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JMSF047M04+           CATACAGTACCAAAAGCTTGAATGTCAACAATGGGATTCCTTCCACTCTGAAATGCTAAA
JMSF020L05+           CATACAGTACCAAAAGCTTGAATGTCAACAATGGGATTCCTTCCACTCTGAAATGCTAAA
                      ____________________________________________________________
consensus             CATACAGTACCAAAAGCTTGAATGTCAACAATGGGATTCCTTCCACTCTGAAATGCTAAA
 
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JMSF047M04+           TGCAGCAATGTAGCATAATAAAAAGGACGGGTGAGTAAGTTACTGGGAAATTTTC     
JMSF020L05+           TGCAGCACTGTAGCATAATAAAAAGGACGGGTGAGTAAGTTACTGGGAAATTTTCAGAAA
                      ____________________________________________________________
consensus             TGCAGCACTGTAGCATAATAAAAAGGACGGGTGAGTAAGTTACTGGGAAATTTTCAGAAA
 
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JMSF020L05+           TGGAGGTGGTGGAGAAGGTGGAGAGTGATAAAGCTAAAGCAGCATAGCACAGGATAAGCT
                      ____________________________________________________________
consensus             TGGAGGTGGTGGAGAAGGTGGAGAGTGATAAAGCTAAAGCAGCATAGCACAGGATAAGCT
 
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JMSF020L05+           GATAAAGCAAAGCGCATGTTCCTCCTTTCTTAGAGAGACTCTTCTCTCTCTCTCTCTGTC
                      ____________________________________________________________
consensus             GATAAAGCAAAGCGCATGTTCCTCCTTTCTTAGAGAGACTCTTCTCTCTCTCTCTCTGTC