Contig 006494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049K11Sequence504006494 (6)ref|XP_009590244.1|2e-51PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni234005818 (5)gb|KDO51391.1|1e-09hypothetical protein CISIN_1g036632mg [Citrus sinensis]
JMFS149F03Sequence643006494 (6)ref|XP_009590244.1|3e-89PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni
JMSF020I19Sequence658006494 (6)ref|XP_009590244.1|7e-78PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni726005818 (5)emb|CAN81366.1|4e-87hypothetical protein VITISV_015775 [Vitis vinifera]
JMSF020O08Sequence684006494 (6)ref|XP_009590244.1|3e-93PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni787005818 (5)ref|XP_009779062.1|2e-158PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni
JMSF040M18Sequence658006494 (6)ref|XP_009590244.1|8e-95PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni909005818 (5)ref|XP_009779062.1|2e-156PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni
JMSF046M24Sequence667006494 (6)ref|XP_009590244.1|2e-93PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni654005818 (5)emb|CAN81366.1|1e-92hypothetical protein VITISV_015775 [Vitis vinifera]

Alignment

This contig is upended


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JMSF040M18+                                                                     AA
                      ____________________________________________________________
consensus                                                                       AA
 
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JMSF046M24+              CCAAAGTTCTCATATATTCCTCATTAACCTCTCCATCAACAACAATGTCTATCATCC
JMSF020O08+              CCAAAGTTCTCATATATTCCTCATTAACCTCTCCATCAACAACAATGTCTATCATCC
JMSF040M18+           TCTCCAAAGTTCTCATATATTCCTCATTAACCTCTCCATCAACAACAATGTCTATCATCC
JMFS149F03+                              TTCCTCATTAACCTCTCCATCAACAACAATGTCTATCATCC
                      ____________________________________________________________
consensus             TCTCCAAAGTTCTCATATATTCCTCATTAACCTCTCCATCAACAACAATGTCTATCATCC
 
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JMSF046M24+           TTGGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
JMSF020O08+           TTGGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
JMSF040M18+           TTGGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
JMFS149F03+           TTGGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
JMSF020I19+             GGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
                      ____________________________________________________________
consensus             TTGGTGGAACAATAATATCTTCAACAAATTTCGACAGTTTTGACTCTGCAACCTTGCGAT
 
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JMSF046M24+           TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
JMSF020O08+           TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
JMSF040M18+           TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
JMFS149F03+           TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
JMFF049K11+                                                                GAGCTTA
JMSF020I19+           TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
                      ____________________________________________________________
consensus             TCTTCAGCTTCAGTCCCATATCCATAGACTTCTCTTGAAGGATTTTTATGTCTGAGCTTA
 
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JMSF046M24+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
JMSF020O08+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
JMSF040M18+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
JMFS149F03+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
JMFF049K11+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
JMSF020I19+           TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
                      ____________________________________________________________
consensus             TAGAACCTATTTCTGTCTGAAATCCACTAAGTAGAGCTTCCATTTGTGAAAGAATCATAT
 
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JMSF046M24+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
JMSF020O08+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
JMSF040M18+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
JMFS149F03+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
JMFF049K11+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
JMSF020I19+           CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
                      ____________________________________________________________
consensus             CACAGTCACGAATTTGATCATGAAGTGAGACAAGATTGTCACTTTCTTTTATGTAATCCT
 
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JMSF046M24+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
JMSF020O08+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
JMSF040M18+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
JMFS149F03+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
JMFF049K11+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
JMSF020I19+           GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
                      ____________________________________________________________
consensus             GGATGGAGTCCAGTTCAACCTGCCGTAAATTGTTTTCAACTCCCTTTGTGTATTCCCGCA
 
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JMSF046M24+           ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
JMSF020O08+           ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
JMSF040M18+           ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
JMFS149F03+           ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
JMFF049K11+           ACTTCATGCCTTTAGACAATATGTTTCCAACTACATCATCACTTTTACACTCCTCTAGTT
JMSF020I19+           ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
                      ____________________________________________________________
consensus             ACTTCATGCCTTTAGACAATATGTTTGCAACTACATCATCACTTTTACACTCCTCTAGTT
 
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JMSF046M24+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
JMSF020O08+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
JMSF040M18+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
JMFS149F03+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
JMFF049K11+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTACTTCATCCTCATCTACATTCAAAT
JMSF020I19+           CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
                      ____________________________________________________________
consensus             CTTCCTCTAACCCCTCAAGTGATATATCCTCACTTGCTTCATCCTCATCTACATTCAAAT
 
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JMSF046M24+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
JMSF020O08+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
JMSF040M18+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
JMFS149F03+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
JMFF049K11+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
JMSF020I19+           CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
                      ____________________________________________________________
consensus             CCTCAACAAACGCCCCCAAGTCCAAGAATGGTCTCTGCCCATCATTTCCTTCACCCGAAT
 
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JMSF046M24+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
JMSF020O08+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
JMSF040M18+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
JMFS149F03+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
JMFF049K11+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAG--AATCTACAGAAC
JMSF020I19+           GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
                      ____________________________________________________________
consensus             GGGGTGTCGCCGCTTCACTCATTTTCAAAATTCCGGCAGCTTCTAGCAAATCTACAGAAC
 
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JMSF046M24+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTA                 
JMSF020O08+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTA                 
JMSF040M18+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTAAGTTGGCAG        
JMFS149F03+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTAAGTTGGCAGATCGGCAA
JMFF049K11+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTA                 
JMSF020I19+           ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTAAGTTGGCAGATCGGCAA
                      ____________________________________________________________
consensus             ATGAATTAGAGCCTATTTGACTATACGTGAACTGATCTCTCTAAGTTGGCAGATCGGCAA
 
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JMFS149F03+           AT                                                          
JMSF020I19+           ATTGCATCCAGATTTCAGAATTTACAGAGTTTGGCTCAGGAATTGGGATAAAAGTAACTC
                      ____________________________________________________________
consensus             ATTGCATCCAGATTTCAGAATTTACAGAGTTTGGCTCAGGAATTGGGATAAAAGTAACTC