| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005I16 | Sequence | 378 | 006490 (10) | emb|CDP01952.1| | 2e-11 | unnamed protein product [Coffea canephora] | 367 | 006490 (10) | gb|AIA08937.1| | 3e-40 | green-ripe like protein 2 [Petunia x hybrida] |
| JMSF006N24 | Sequence | 310 | 006490 (10) | 319 | 006490 (10) | gb|AIA08937.1| | 2e-40 | green-ripe like protein 2 [Petunia x hybrida] | |||
| JMSF016I16 | Sequence | 509 | 006490 (10) | emb|CDP01952.1| | 2e-39 | unnamed protein product [Coffea canephora] | 746 | 006490 (10) | emb|CDP01952.1| | 3e-115 | unnamed protein product [Coffea canephora] |
| JMSF019P04 | Sequence | 451 | 006490 (10) | emb|CDP01952.1| | 7e-28 | unnamed protein product [Coffea canephora] | 752 | 006490 (10) | emb|CDP01952.1| | 5e-113 | unnamed protein product [Coffea canephora] |
| JMSF028L21 | Sequence | 666 | 006490 (10) | emb|CDP01952.1| | 1e-61 | unnamed protein product [Coffea canephora] | 730 | 006490 (10) | emb|CDP01952.1| | 2e-114 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF005I16- CGACAATC
____________________________________________________________
consensus CGACAATC
. : . : . : . : . : . :
rJMSF005I16- CATTGTATTTCATATCAGAATCACGGTACATGTTTTACATATAGACTGAGTAGGATAGGA
rJMSF019P04- ATATAGACTGAGTAGGATAGGA
rJMSF028L21- ATATAGACTGAGTAGGATAGGA
rJMSF006N24- TAGGATAGGA
rJMSF016I16- ATATAGACTGAGTAGGATAGGA
____________________________________________________________
consensus CATTGTATTTCATATCAGAATCACGGTACATGTTTTACATATAGACTGAGTAGGATAGGA
. : . : . : . : . : . :
rJMSF005I16- AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
rJMSF019P04- AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
rJMSF028L21- AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
rJMSF006N24- AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
rJMSF016I16- AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
____________________________________________________________
consensus AACAGCGGGCGACTACAAATAGATCATCTTCTTGAAACAGTAGGAACCGATAAGAAACCA
. : . : . : . : . : . :
rJMSF005I16- GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
rJMSF019P04- GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
rJMSF028L21- GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
rJMSF006N24- GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
rJMSF016I16- GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
____________________________________________________________
consensus GCCAACAAGAACAGCAATGAAGATTGCCCAGTAGGTTAGGAAAGCCTCTCCCCCGAAGGT
. : . : . : . : . : . :
rJMSF005I16- GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
rJMSF019P04- GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
rJMSF028L21- GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
rJMSF006N24- GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
rJMSF016I16- GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
____________________________________________________________
consensus GAGCCCTAAACCGAAAACTATAAGAAAAGGTAAATAGGTTTGCAAGATGGAGGCTTTGCG
. : . : . : . : . : . :
rJMSF005I16- AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
rJMSF019P04- AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
rJMSF028L21- AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
rJMSF006N24- AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
rJMSF016I16- AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
____________________________________________________________
consensus AACCCATTGTCCCTTGAGTAAGATGTAAACTGCTAAACTAACAACATTCCACCCCCCAGC
. : . : . : . : . : . :
rJMSF005I16- CTGGAAGCCCAACCGGTTTAAAGCATTGGCNACGAATGAGTGGCAGTTGCAGGTGA
rJMSF019P04- CTGGAAGCCCAACCGGTTTAAAGCATTGGCAACGAATGAGTGGCAGTTGCAGGTGAGAAG
rJMSF028L21- CTGGAAGCCCAACCGGTTTAAAGCATTGGCAACGAATGAGTGGCAGTTGCAGGTGAGAAG
rJMSF006N24- CTGGAAGCCCAACCGGTTTAAAGCATTGGCAACGAATGAGTGGCAGTTGCAGGTGAGA
rJMSF016I16- CTGGAAGCCCAACCGGTTTAAAGCATTGGCAACGAATGAGTGGCAGTTGCAGGTGAGAAG
JMSF028L21+ GGTGAGAAG
____________________________________________________________
consensus CTGGAAGCCCAACCGGTTTAAAGCATTGGCAACGAATGAGTGGCAGTTGCAGGTGAGAAG
. : . : . : . : . : . :
rJMSF019P04- GTTATAAGATCGGTGCTGGAATTCTTCTGTGCTCTTGTGCAATGCACCATCCCATGTCGT
rJMSF028L21- GTTATAAGATCGGTGCTGGAATTCTTCTGTGCTCTTGTGCAATGCACCATCCCATGTCGT
rJMSF016I16- GTTATAAGATCGGTGCTGGAATTCTTCTGTGCTCTTGTGCAATGCACCATCCCATGTCGT
JMSF028L21+ GTTATAAGATCGGTGCTGGAATTCTTCTGTGCTCTTGTGCAATGCACCATCCCATGTCGT
____________________________________________________________
consensus GTTATAAGATCGGTGCTGGAATTCTTCTGTGCTCTTGTGCAATGCACCATCCCATGTCGT
. : . : . : . : . : . :
rJMSF019P04- AGCATCATTTCCAGTTTCACTGTAATTCTGGTCATCTTCCCTTTCATATTGAGCAGGATA
rJMSF028L21- AGCATCATTTCCAGTTTCACTGTAATTCTGGTCATCTTCCCTTTCATATTGAGCAGGATA
rJMSF016I16- AGCATCATTTCCAGTTTCACTGTAATTCTGGTCATCTTCCCTTTCATATTGAGCAGGATA
JMSF028L21+ AGCATCATTTCCAGTTTCACTGTAATTCTGGTCATCTTCCCTTTCATATTGAGCAGGATA
____________________________________________________________
consensus AGCATCATTTCCAGTTTCACTGTAATTCTGGTCATCTTCCCTTTCATATTGAGCAGGATA
. : . : . : . : . : . :
rJMSF019P04- GCGAGAAACACGGCACTCATCTTTTCTTATCCGAATGTAGCGAGCTGGTGCTCCAAATGC
rJMSF028L21- GCGAGAAACACGGCACTCATCTTTTCTTATCCGAATGTAGCGAGCTGGTGCTCCAAATGC
rJMSF016I16- GCGAGAAACACGGCACTCATCTTTTCTTATCCGAATGTAGCGAGCTGGTGCTCCAAATGC
JMSF028L21+ GCGAGAAACACGGCACTCATCTTTTCTTATCCGAATGTAGCGAGCTGGTGCTCCAAATGC
JMSF016I16+ CCGAATGTAGCGAGCTGGTGCTCCAAATGC
____________________________________________________________
consensus GCGAGAAACACGGCACTCATCTTTTCTTATCCGAATGTAGCGAGCTGGTGCTCCAAATGC
. : . : . : . : . : . :
rJMSF019P04- AAAATTGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
rJMSF028L21- AAAATTGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
rJMSF016I16- AAAATTGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
JMSF028L21+ AAAATNGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
JMSF016I16+ AAAATNGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
JMSF019P04+ CCTGCAAAATCCAAGATAACTCCATCCTCTCT
____________________________________________________________
consensus AAAATTGTCTACGCACACAAAATTTGGCCCTGCAAAATCCAAGATAACTCCATCCTCTCT
. : . : . : . : . : . :
rJMSF019P04- ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
rJMSF028L21- ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
rJMSF016I16- ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
JMSF028L21+ ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
JMSF016I16+ ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
JMSF005I16+ CATGACAGGCAGCGGTGTCCA
JMSF019P04+ ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
____________________________________________________________
consensus ACATATTCCAATGTGACCAATAAGAGGGATAAACCACGACATGACAGGCAGCGGTGTCCA
. : . : . : . : . : . :
rJMSF019P04- CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
rJMSF028L21- CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCANTCAT
rJMSF016I16- CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
JMSF028L21+ CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
JMSF016I16+ CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
JMSF005I16+ CACAATGCAGCAGGGAAAACGTGCTCTTCTNGGATCTATTTCCACACTTTCTTCAATCAT
JMSF006N24+ TCTTCAATCAT
JMSF019P04+ CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
____________________________________________________________
consensus CACAATGCAGCAGGGAAAACGTGCTCTTCTTGGATCTATTTCCACACTTTCTTCAATCAT
. : . : . : . : . : . :
rJMSF019P04- CAGAGTATTTTCAGGATCAATATTGGGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
rJMSF028L21- CAGAGTATTTTCAGGATCAATATT-GGGCTCCATNGCTAAAGCAGTAAA
rJMSF016I16- CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
JMSF028L21+ CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
JMSF016I16+ CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
JMSF005I16+ CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
JMSF006N24+ CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
JMSF019P04+ CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
____________________________________________________________
consensus CAGAGTATTTTCAGGATCAATATT-GGGCTCCATTGCTAAAGCAGTAAAAGATAGACTTT
. : . : . : . : . : . :
rJMSF019P04- GCCT
rJMSF016I16- GCCTT
JMSF028L21+ GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
JMSF016I16+ GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
JMSF005I16+ GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
JMSF006N24+ GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
JMSF019P04+ GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
____________________________________________________________
consensus GCCTTGAAGATGAATGGAAGCGCAGGCAAGCTTTTTCTTGGGTGAAGAGAGCTGACGAAA
. : . : . : . : . : . :
JMSF028L21+ TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
JMSF016I16+ TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
JMSF005I16+ TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
JMSF006N24+ TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
JMSF019P04+ TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
____________________________________________________________
consensus TCCCAAAAGATATTCGAACCTGTGGTAGCAGTTCTATGCAGACAAAGAACCCGACGCCGA
. : . : . : . : . : . :
JMSF028L21+ GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
JMSF016I16+ GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
JMSF005I16+ GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
JMSF006N24+ GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
JMSF019P04+ GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
____________________________________________________________
consensus GCCCAAATTGCAGCCAGAAATCGCGGCTTGCTTACTCCCCGGCGCGAGAGATCTTGATTT
. : . : . : . : . : . :
JMSF028L21+ CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCAT
JMSF016I16+ CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCAT
JMSF005I16+ CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCA
JMSF006N24+ CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCAT
JMSF019P04+ CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCATGTC
____________________________________________________________
consensus CTTTCACCTCGCGCTCGCGATTAAAACTTAGAAGGGAGCCAACTCACGCCAAGCCATGTC