clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF005G24 | Sequence | 284 | 006488 (5) | ||||||||
JMSF006M06 | Sequence | 385 | 006488 (5) | ref|XP_004229502.1| | 3e-08 | PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu | |||||
JMSF019H13 | Sequence | 522 | 006488 (5) | ref|XP_009619108.1| | 2e-10 | PREDICTED: isoleucine--tRNA ligase, mitochondrial isoform X1 [Nicotiana tomento | |||||
JMSF032G01 | Sequence | 716 | 006488 (5) | ref|XP_004229502.1| | 3e-67 | PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu | 577 | 011357 (3) | emb|CAN78050.1| | 6e-45 | hypothetical protein VITISV_015862 [Vitis vinifera] |
JMSF047N04 | Sequence | 649 | 006488 (5) | ref|XP_004229502.1| | 3e-38 | PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu | 569 | 011357 (3) | emb|CAN78050.1| | 1e-46 | hypothetical protein VITISV_015862 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF032G01+ CACTTTATGG
____________________________________________________________
consensus CACTTTATGG
. : . : . : . : . : . :
JMSF032G01+ TTTTGAAGAAGCTTATAACGATTAATAATGTCCTTCAAAATCTTATTTAAAGCATGCCCC
____________________________________________________________
consensus TTTTGAAGAAGCTTATAACGATTAATAATGTCCTTCAAAATCTTATTTAAAGCATGCCCC
. : . : . : . : . : . :
JMSF047N04+ CCCCATTA
JMSF032G01+ ATGTGTAAATCACCATTAGCATAAGGAGGACCATCATGAAGAACAAAATTTGCCCCATTA
____________________________________________________________
consensus ATGTGTAAATCACCATTAGCATAAGGAGGACCATCATGAAGAACAAAATTTGCCCCATTA
. : . : . : . : . : . :
JMSF047N04+ TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
JMSF032G01+ TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
____________________________________________________________
consensus TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
. : . : . : . : . : . :
JMSF047N04+ TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
JMSF032G01+ TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
____________________________________________________________
consensus TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
. : . : . : . : . : . :
JMSF006M06+ CCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF047N04+ TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF032G01+ TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF019H13+ TGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
____________________________________________________________
consensus TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
. : . : . : . : . : . :
JMSF006M06+ CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF047N04+ CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF032G01+ CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF019H13+ CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
____________________________________________________________
consensus CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
. : . : . : . : . : . :
JMSF006M06+ TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF047N04+ TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF032G01+ TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF019H13+ TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
____________________________________________________________
consensus TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
. : . : . : . : . : . :
JMSF006M06+ CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF047N04+ CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF032G01+ CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF005G24+ TAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF019H13+ CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
____________________________________________________________
consensus CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
. : . : . : . : . : . :
JMSF006M06+ AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF047N04+ AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF032G01+ AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF005G24+ AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF019H13+ AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
____________________________________________________________
consensus AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
. : . : . : . : . : . :
JMSF006M06+ ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF047N04+ ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF032G01+ ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF005G24+ ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF019H13+ ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
____________________________________________________________
consensus ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
. : . : . : . : . : . :
JMSF006M06+ TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGC
JMSF047N04+ TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGC
JMSF032G01+ TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
JMSF005G24+ TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
JMSF019H13+ TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
____________________________________________________________
consensus TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
. : . : . : . : . : . :
JMSF032G01+ AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAAC
JMSF005G24+ AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGT
JMSF019H13+ AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGTGGTTAAT
____________________________________________________________
consensus AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGTGGTTAAT
. : . : . : . : . : . :
JMSF019H13+ TGCATTCCACCACTTGTATTTTCTGAAATTGGGTGTGCCCTGAATTCTGCTGCGCTGCCC
____________________________________________________________
consensus TGCATTCCACCACTTGTATTTTCTGAAATTGGGTGTGCCCTGAATTCTGCTGCGCTGCCC