Contig 006484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035B19Sequence496006484 (5)ref|XP_011089657.1|2e-14PREDICTED: putative G3BP-like protein [Sesamum indicum] ref|XP_011089659.1| PRED
JMFS068F12Sequence615006484 (5)ref|XP_006352680.1|2e-69PREDICTED: putative G3BP-like protein-like isoform X3 [Solanum tuberosum]
JMFS115H02Sequence551006484 (5)ref|XP_009799395.1|8e-53PREDICTED: putative G3BP-like protein isoform X4 [Nicotiana sylvestris]
JMSF019D20Sequence501006484 (5)ref|XP_009799395.1|1e-38PREDICTED: putative G3BP-like protein isoform X4 [Nicotiana sylvestris]740006484 (5)ref|XP_009775385.1|2e-27PREDICTED: putative G3BP-like protein isoform X4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN035B19+                      GAAAAAACTCGTGAAACATTATGCCCCTGAAAAAAATAATGGTCATTCA
rJMSF019D20-                                                          AATGGTCATTCA
                      ____________________________________________________________
consensus                        GAAAAAACTCGTGAAACATTATGCCCCTGAAAAAAATAATGGTCATTCA
 
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JMFN035B19+           TGACAGACACTCAATCTTTTGAATTATTGCAATTCAAAAATATAATCCCTACTTAAATCA
rJMSF019D20-          TGACAGACACTCAATCTTTTGAATTATTGCAATTCAAAAATATAATCCCTACTTAAATCA
                      ____________________________________________________________
consensus             TGACAGACACTCAATCTTTTGAATTATTGCAATTCAAAAATATAATCCCTACTTAAATCA
 
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JMFN035B19+           GCTCTCATGATCAATCCAAGTATTTTGTTCAAGCAGTAGCAGTTACTCGTGGTGCCATGG
rJMSF019D20-          GCTCTCATGATCAATCCAAGTATTTTGTTCAAGCAGTAGCAGTTACTCGTGGTGCCATGG
                      ____________________________________________________________
consensus             GCTCTCATGATCAATCCAAGTATTTTGTTCAAGCAGTAGCAGTTACTCGTGGTGCCATGG
 
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JMFN035B19+           TTTTTGCGGTACCATTAGGCATACCACCAGCACGATTCACGCGACCACCGTTGCTTCCAG
rJMSF019D20-          TTTTTGCGGTACCATTAGGCATACCACCAGCACGATTCACGCGACCACCGTTGCTTCCAG
                      ____________________________________________________________
consensus             TTTTTGCGGTACCATTAGGCATACCACCAGCACGATTCACGCGACCACCGTTGCTTCCAG
 
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JMFN035B19+           CATTGTCAACCCTCTGATATGCATCACCTCCACGGTTCAATGGTCCTCCGCGATTCCCAC
rJMSF019D20-          CATTGTCAACCCTCTGATATGCATCACCTCCACGGTTCAATGGTCCTCCGCGATTCCCAC
                      ____________________________________________________________
consensus             CATTGTCAACCCTCTGATATGCATCACCTCCACGGTTCAATGGTCCTCCGCGATTCCCAC
 
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JMFN035B19+           CTCTGTTGTTGAATTCATTCCTGCCATTAAACTCTCCTCTGTTATACCCCCTGCCACCTC
rJMSF019D20-          CTCTGTTGTTGAATTCATTCCTGCCATTAAACTCTCCTCTGTTATACCCCCTGCCACCTC
                      ____________________________________________________________
consensus             CTCTGTTGTTGAATTCATTCCTGCCATTAAACTCTCCTCTGTTATACCCCCTGCCACCTC
 
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JMFN035B19+           CATAATTTCCTCGCCCTCTCACTCCTTCATTTCTGAATCCAGAACCCCTCCCAGGTAAGA
rJMSF019D20-          CATAATTTCCTCGCCCTCTCACTCCTTCATTTCTGAATCCAGAACCCCTCCCAGGTAAGA
                      ____________________________________________________________
consensus             CATAATTTCCTCGCCCTCTCACTCCTTCATTTCTGAATCCAGAACCCCTCCCAGGTAAGA
 
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JMFN035B19+           ACCTTCTATTATTGCTTCCAACTCGTGAATTAGTAGACCGCTTCTCCTCAACAACAG   
rJMSF019D20-          ACCTTCTATTATTGCTTCCAACTCGTGAATTAGTAGACCGCTTCTCCTCAACAACAGGCA
                      ____________________________________________________________
consensus             ACCTTCTATTATTGCTTCCAACTCGTGAATTAGTAGACCGCTTCTCCTCAACAACAGGCA
 
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rJMSF019D20-          CATCTCCATTCTCAGCAGGGCTGACCACTTCTCCATTTGGTTCCTCTATTGATGCCGTGT
                      ____________________________________________________________
consensus             CATCTCCATTCTCAGCAGGGCTGACCACTTCTCCATTTGGTTCCTCTATTGATGCCGTGT
 
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rJMSF019D20-          TATGCTCCAATACATGATTATCTTGCTCTGGAGGAGGACTTGGCTCTGGAGTAGAAGGAA
JMFS068F12+                                                                  AGGAA
                      ____________________________________________________________
consensus             TATGCTCCAATACATGATTATCTTGCTCTGGAGGAGGACTTGGCTCTGGAGTAGAAGGAA
 
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rJMSF019D20-          CCACTGGAATATGGCTCCTATCATTTTGTTTGATGGTGTCCACATATCGAAACATGTCAT
JMFS068F12+           CCACTGGAATATGGCTCCTATCATTNTGTTTGATGGTGTCCACATATCGAAACATGTCAT
                      ____________________________________________________________
consensus             CCACTGGAATATGGCTCCTATCATTTTGTTTGATGGTGTCCACATATCGAAACATGTCAT
 
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rJMSF019D20-          TCAATACAAAGTACCCCCGATCTTGTGGTGCAAGAAAGAAAGACTGTGAGAAGTTTCGGA
JMFS068F12+           TCAATACAAAGTACCCCCGATCTTGTGGTGCAAGAAAGAAAGACTGTGAGAAGTTTCGGA
JMFS115H02+                                        GCAAGAAAGAAAGACTGTGAGAAGTTTCGGA
                      ____________________________________________________________
consensus             TCAATACAAAGTACCCCCGATCTTGTGGTGCAAGAAAGAAAGACTGTGAGAAGTTTCGGA
 
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rJMSF019D20-          TCTCATTATCCGGCCCAGTCAGATACCCAGTAACAAGAACAGATACCCCTCCATCAAAAG
JMFS068F12+           TCTCATTATCCGGCCCAGTCAGATACCCAGTAACAAGAACAGATACCCCTCCATCAAAAG
JMFS115H02+           TCTCATTATCCGGCCCAGTCAGATACCCAGTAACAAGAACAGATACCCCTCCATCAAAAG
JMSF019D20+                                                  CAGATACCCCTCCATCAAAAG
                      ____________________________________________________________
consensus             TCTCATTATCCGGCCCAGTCAGATACCCAGTAACAAGAACAGATACCCCTCCATCAAAAG
 
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rJMSF019D20-          ATTCTTGG                                                    
JMFS068F12+           ATTCTTGGGCATCAATAGACTTAATTTCAGCTCTTAAGTCCGCATAATTAAGAGAGAGTA
JMFS115H02+           ATTCTTGGGCATCAATAGACTTAATTTCAGCTCTTAAGTCCGCATAATTAAGAGAGAGTA
JMSF019D20+           ATTCTTGGGCATCAATAGACTTAATTTCAGCTCTTAAGTCCGCATAATTAAGAGAGAGTA
                      ____________________________________________________________
consensus             ATTCTTGGGCATCAATAGACTTAATTTCAGCTCTTAAGTCCGCATAATTAAGAGAGAGTA
 
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JMFS068F12+           TCTTGTCATTGATTGCTTGCATTGTGGTAGTGCTGCTCAAGGATCCATCTTCCTCAGGGC
JMFS115H02+           TCTTGTCATTGATTGCTTGCATTGTGGTAGTGCTGCTCAAGGATCCATCTTCCTCAGGGC
JMSF019D20+           TCTTGTCATTGATTGCTTGCATTGTGGTAGTGCTGCTCAAGGATCCATCTTCCTCAGGGC
                      ____________________________________________________________
consensus             TCTTGTCATTGATTGCTTGCATTGTGGTAGTGCTGCTCAAGGATCCATCTTCCTCAGGGC
 
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JMFS068F12+           GGCCTAGTTTACTTATATCCTGATAAAACCTGAAAACGAGTTCAGGAGAGTGGTGCAGTA
JMFS115H02+           GGCCTAGTTTACTTATATCCTGATAAAACCTGAAAACGAGTTCAGGAGAGTGGTGCAGTA
JMSF019D20+           GGCCTAGTTTACTTATATCCTGATAAAACCTGAAAACGAGTTCAGGAGAGTGGTGCAGTA
                      ____________________________________________________________
consensus             GGCCTAGTTTACTTATATCCTGATAAAACCTGAAAACGAGTTCAGGAGAGTGGTGCAGTA
 
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JMFS068F12+           TATGATAATACTGCTGCACAAACGCGTTGCCCACGACTTGGGCAGAGACCGCCGGTTGCG
JMFS115H02+           TATGATAATACTGCTGCACAAACGCGTTGCCCACGACTTGGGCAGAGACCGCCGGTTGCG
JMSF019D20+           TATGATAATACTGCTGCACAAACGCGTTGCCCACGACTTGGGCAGAGACCGCCGGTTGCG
                      ____________________________________________________________
consensus             TATGATAATACTGCTGCACAAACGCGTTGCCCACGACTTGGGCAGAGACCGCCGGTTGCG
 
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JMFS068F12+           CCGCCACCTCTGGAGCTGCTACTGTCGCCATCGCCACTCGATCTCAACTAACAAGCTGCC
JMFS115H02+           CCGCCACCTCTGGAGCTGCTACTGTCGCCATCGCCACTCGATCTCAACTAACAAGCTGC-
JMSF019D20+           CCGCCACCTCTGGAGCTGCTACTGTCGCCATCGCCACTCGATCTCAACTAACAAGCTGCC
                      ____________________________________________________________
consensus             CCGCCACCTCTGGAGCTGCTACTGTCGCCATCGCCACTCGATCTCAACTAACAAGCTGCC
 
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JMFS068F12+           TGCGAAAACTGAGCTCGAATCGGATCGAGAAAATTAGGCGAAGGAGAGGAAAGTGAGCTG
JMFS115H02+           --------CTGAGCTCGAATCGGATCGAGAAAATTAGGCGAAGGAGAGGAAAGTGAGCTG
JMSF019D20+           TGCGAAAACTGAGCTCGAATCGGATCGAGAAAATTAGGCGAAGGAGAGGAAAGTGAGCTG
                      ____________________________________________________________
consensus             TGCGAAAACTGAGCTCGAATCGGATCGAGAAAATTAGGCGAAGGAGAGGAAAGTGAGCTG
 
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JMFS068F12+           TGCGGATTGCGTCTCTTCGCTTTTCTACTCTCTCCCACTTGCTTTGCTCGGAGCTCGAGG
JMFS115H02+           TGCGGATTGCGTCTCTTCGCTTTTCTACTCTCTCCCACTTGCTTTGCTCGGAGCTCGAGG
JMSF019D20+           TGCGGATTGCGTCTCTTCGCTTTTCTACTCTCTCCCACTTGCTTTGCTCGGAGCTCGAGG
                      ____________________________________________________________
consensus             TGCGGATTGCGTCTCTTCGCTTTTCTACTCTCTCCCACTTGCTTTGCTCGGAGCTCGAGG
 
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JMFS068F12+           AATGGCGGTG                                                  
JMFS115H02+           AATGGCGGTGCAGGGAGGTTGTATCTAGGGTTTTTGCAAGCGGGATCTT           
JMSF019D20+           AATGGCGGTGCAGGGAGGTTGTATCTAGGGTTTTTGCAAGCGGGATCTTGAAGAGCCGCC
                      ____________________________________________________________
consensus             AATGGCGGTGCAGGGAGGTTGTATCTAGGGTTTTTGCAAGCGGGATCTTGAAGAGCCGCC