clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF013B05 | Sequence | 340 | 006478 (4) | ref|XP_007140432.1| | 3e-10 | hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot | 681 | 005554 (3) | ref|XP_009778445.1| | 1e-123 | PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris] |
JMFF049D18 | Sequence | 611 | 006478 (4) | ref|XP_009586657.1| | 5e-66 | PREDICTED: protein SSUH2 homolog isoform X2 [Nicotiana tomentosiformis] | 572 | 005554 (3) | ref|XP_009778445.1| | 2e-83 | PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris] |
JMFS011D03 | Sequence | 615 | 006478 (4) | ref|XP_010325816.1| | 1e-77 | PREDICTED: protein SSUH2 homolog isoform X3 [Solanum lycopersicum] | |||||
JMSF018F03 | Sequence | 256 | 006478 (4) | ref|XP_007140432.1| | 7e-11 | hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot | 745 | 005554 (3) | ref|XP_009778445.1| | 3e-121 | PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFS011D03+ CAACCTGGGCATTTGTCAAT
____________________________________________________________
consensus CAACCTGGGCATTTGTCAAT
. : . : . : . : . : . :
JMFS011D03+ CTTTTCAGAATGAGGAACTCTTGTCCGCGACTCTTTGTGAGGTATAAACAAGACGGGAAA
JMFF049D18+ CAAGACGGGAAA
____________________________________________________________
consensus CTTTTCAGAATGAGGAACTCTTGTCCGCGACTCTTTGTGAGGTATAAACAAGACGGGAAA
. : . : . : . : . : . :
JMFS011D03+ TTCAGACCTTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
JMFF049D18+ TTCAGACTNTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
____________________________________________________________
consensus TTCAGACTTTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
. : . : . : . : . : . :
JMFS011D03+ TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
JMFF049D18+ TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
____________________________________________________________
consensus TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
. : . : . : . : . : . :
JMFS011D03+ AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
JMFF049D18+ AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
____________________________________________________________
consensus AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
. : . : . : . : . : . :
JMFS011D03+ AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
JMFF049D18+ AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
____________________________________________________________
consensus AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
. : . : . : . : . : . :
JMFS011D03+ CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
JMFF013B05+ TTGCCTCCGATCACCACCAGCAGCTNTGGCTACTTCCCCATA
JMFF049D18+ CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
____________________________________________________________
consensus CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
. : . : . : . : . : . :
JMFS011D03+ ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMFF013B05+ ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMFF049D18+ ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMSF018F03+ GATAGGACTGGGGAGA
____________________________________________________________
consensus ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
. : . : . : . : . : . :
JMFS011D03+ GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMFF013B05+ GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMFF049D18+ GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMSF018F03+ GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
____________________________________________________________
consensus GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
. : . : . : . : . : . :
JMFS011D03+ TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMFF013B05+ TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMFF049D18+ TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMSF018F03+ TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
____________________________________________________________
consensus TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
. : . : . : . : . : . :
JMFS011D03+ CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGG
JMFF013B05+ CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
JMFF049D18+ CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
JMSF018F03+ CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
____________________________________________________________
consensus CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
. : . : . : . : . : . :
JMFF013B05+ CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTC
JMFF049D18+ CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTC
JMSF018F03+ CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTCTC
____________________________________________________________
consensus CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTCTC