Contig 006473:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040E02Sequence547006473 (6)ref|XP_009761641.1|7e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana762001453 (5)ref|XP_009623669.1|2e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMFF042M01Sequence658006473 (6)ref|XP_009623669.1|1e-52PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana615001453 (5)
JMFS103F06Sequence562006473 (6)ref|XP_009623669.1|6e-55PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMSF017F22Sequence227006473 (6)ref|XP_010266472.1|8e-05PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nelumbo n718001453 (5)ref|XP_009623669.1|1e-26PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMSF028J10Sequence670006473 (6)ref|XP_009623669.1|2e-59PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana722001453 (5)gb|KHN06295.1|4e-18Hypothetical protein glysoja_021133 [Glycine soja]
JMSF041I03Sequence794006473 (6)ref|XP_009623669.1|7e-83PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana767001453 (5)ref|XP_009623669.1|2e-12PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF041I03+ CTTTAATTGCATAAGCA
                      ____________________________________________________________
consensus CTTTAATTGCATAAGCA
 
. : . : . : . : . : . :
JMSF041I03+ GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
                      ____________________________________________________________
consensus GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
 
. : . : . : . : . : . :
JMSF028J10+ TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMFF042M01+ AG
JMFS103F06+ TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMSF041I03+ TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
                      ____________________________________________________________
consensus TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
 
. : . : . : . : . : . :
JMSF028J10+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFF042M01+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFS103F06+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMSF041I03+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
                      ____________________________________________________________
consensus AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
 
. : . : . : . : . : . :
JMSF028J10+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF042M01+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFS103F06+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMSF041I03+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF040E02+ AACTGTGCA
                      ____________________________________________________________
consensus ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
 
. : . : . : . : . : . :
JMSF028J10+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF042M01+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFS103F06+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMSF041I03+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF040E02+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
                      ____________________________________________________________
consensus TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
 
. : . : . : . : . : . :
JMSF028J10+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF042M01+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFS103F06+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMSF041I03+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF040E02+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
                      ____________________________________________________________
consensus GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
 
. : . : . : . : . : . :
JMSF028J10+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATGACCCCGCTTGGATCG
JMFF042M01+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFS103F06+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMSF041I03+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFF040E02+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
                      ____________________________________________________________
consensus ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
 
. : . : . : . : . : . :
JMSF028J10+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF042M01+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFS103F06+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMSF041I03+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF040E02+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
                      ____________________________________________________________
consensus AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
 
. : . : . : . : . : . :
JMSF028J10+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF042M01+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFS103F06+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMSF041I03+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF040E02+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
                      ____________________________________________________________
consensus CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
 
. : . : . : . : . : . :
JMSF028J10+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF042M01+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFS103F06+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF041I03+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF040E02+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF017F22+ GAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
                      ____________________________________________________________
consensus TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
 
. : . : . : . : . : . :
JMSF028J10+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF042M01+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFS103F06+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCA
JMSF041I03+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF040E02+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMSF017F22+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
                      ____________________________________________________________
consensus TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
 
. : . : . : . : . : . :
JMSF028J10+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF042M01+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF041I03+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF040E02+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF017F22+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGCTCTCTATATATTCTGA
                      ____________________________________________________________
consensus ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
 
. : . : . : . : . : . :
JMSF028J10+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCA
JMFF042M01+ GAGGATTGATGGAAGCTTAANTTGTAGCTATACCATAACTTTGATTCTTGTGATCT
JMSF041I03+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGCGATCT
JMFF040E02+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCT
JMSF017F22+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC
                      ____________________________________________________________
consensus GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC