Contig 006473:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040E02Sequence547006473 (6)ref|XP_009761641.1|7e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana762001453 (5)ref|XP_009623669.1|2e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMFF042M01Sequence658006473 (6)ref|XP_009623669.1|1e-52PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana615001453 (5)
JMFS103F06Sequence562006473 (6)ref|XP_009623669.1|6e-55PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMSF017F22Sequence227006473 (6)ref|XP_010266472.1|8e-05PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nelumbo n718001453 (5)ref|XP_009623669.1|1e-26PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMSF028J10Sequence670006473 (6)ref|XP_009623669.1|2e-59PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana722001453 (5)gb|KHN06295.1|4e-18Hypothetical protein glysoja_021133 [Glycine soja]
JMSF041I03Sequence794006473 (6)ref|XP_009623669.1|7e-83PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana767001453 (5)ref|XP_009623669.1|2e-12PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana

Alignment

This contig is upended


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JMSF041I03+                                                      CTTTAATTGCATAAGCA
                      ____________________________________________________________
consensus                                                        CTTTAATTGCATAAGCA
 
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JMSF041I03+           GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
                      ____________________________________________________________
consensus             GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
 
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JMSF028J10+                                         TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMFF042M01+                                                                     AG
JMFS103F06+                                         TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMSF041I03+           TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
                      ____________________________________________________________
consensus             TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
 
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JMSF028J10+           AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFF042M01+           AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFS103F06+           AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMSF041I03+           AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
                      ____________________________________________________________
consensus             AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
 
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JMSF028J10+           ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF042M01+           ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFS103F06+           ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMSF041I03+           ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF040E02+                                                              AACTGTGCA
                      ____________________________________________________________
consensus             ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
 
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JMSF028J10+           TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF042M01+           TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFS103F06+           TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMSF041I03+           TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF040E02+           TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
                      ____________________________________________________________
consensus             TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
 
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JMSF028J10+           GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF042M01+           GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFS103F06+           GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMSF041I03+           GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF040E02+           GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
                      ____________________________________________________________
consensus             GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
 
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JMSF028J10+           ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATGACCCCGCTTGGATCG
JMFF042M01+           ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFS103F06+           ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMSF041I03+           ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFF040E02+           ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
                      ____________________________________________________________
consensus             ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
 
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JMSF028J10+           AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF042M01+           AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFS103F06+           AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMSF041I03+           AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF040E02+           AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
                      ____________________________________________________________
consensus             AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
 
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JMSF028J10+           CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF042M01+           CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFS103F06+           CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMSF041I03+           CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF040E02+           CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
                      ____________________________________________________________
consensus             CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
 
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JMSF028J10+           TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF042M01+           TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFS103F06+           TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF041I03+           TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF040E02+           TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF017F22+                       GAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
                      ____________________________________________________________
consensus             TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
 
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JMSF028J10+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF042M01+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFS103F06+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCA        
JMSF041I03+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF040E02+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMSF017F22+           TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
                      ____________________________________________________________
consensus             TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
 
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JMSF028J10+           ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF042M01+           ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF041I03+           ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF040E02+           ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF017F22+           ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGCTCTCTATATATTCTGA
                      ____________________________________________________________
consensus             ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
 
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JMSF028J10+           GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCA                         
JMFF042M01+           GAGGATTGATGGAAGCTTAANTTGTAGCTATACCATAACTTTGATTCTTGTGATCT    
JMSF041I03+           GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGCGATCT    
JMFF040E02+           GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCT    
JMSF017F22+           GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC
                      ____________________________________________________________
consensus             GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC