Contig 006472:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N17Sequence605006472 (3)ref|XP_009587959.1|4e-52PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t758001080 (3)ref|XP_002523482.1|6e-114histidinol dehydrogenase, putative [Ricinus communis] gb|EEF38941.1| histidinol
JMFF014G12Sequence497006472 (3)ref|XP_009587959.1|2e-28PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t800001080 (3)gb|KDP34920.1|2e-123hypothetical protein JCGZ_09208 [Jatropha curcas]
JMSF017F06Sequence608006472 (3)ref|XP_009587959.1|1e-24PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t784001080 (3)gb|KDP34920.1|7e-133hypothetical protein JCGZ_09208 [Jatropha curcas]

Alignment

This contig is upended


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JMFF003N17+                                                            TTTGTGCAGCA
                      ____________________________________________________________
consensus                                                              TTTGTGCAGCA
 
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JMFF003N17+           TGGAAGGCATATATATTGTTATATGCTATATCAAATGCCTCACGAACATCTGCTTCAAGC
                      ____________________________________________________________
consensus             TGGAAGGCATATATATTGTTATATGCTATATCAAATGCCTCACGAACATCTGCTTCAAGC
 
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JMFF003N17+           TCTGGGTCAGGAAGTTCATTGACATTTTCAACCATTTTGTCCAGTTCAACCTTGTCATAC
JMFF014G12+                                                TGTCCAGTTCAACCTTGTCATAC
JMSF017F06+                                                               TGTCATAC
                      ____________________________________________________________
consensus             TCTGGGTCAGGAAGTTCATTGACATTTTCAACCATTTTGTCCAGTTCAACCTTGTCATAC
 
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JMFF003N17+           CGGATGGTATAGTCTTTTACTGCAACATCCCCTCTAGTACGAACATCATCAACAATGGGC
JMFF014G12+           CGGATGGTATAGTCTTTTACTGCAACATCCCCTCTAGTACGAACATCATCAACAATGGGC
JMSF017F06+           CGGATGGTATAGTCTTTTACTGCAACATCCCCTNTAGTACGAACATCATCAACAATGGGC
                      ____________________________________________________________
consensus             CGGATGGTATAGTCTTTTACTGCAACATCCCCTCTAGTACGAACATCATCAACAATGGGC
 
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JMFF003N17+           TGGACCATGTTGAAAATGGAAGAGAAATCAATGCGAGGACGAGTTTTTAGTTTATCAACC
JMFF014G12+           TGGACCATGTTGAAAATGGAAGAGAAATCAATGCGAGGACGAGTTTTTAGTTTATCAACC
JMSF017F06+           TGGACCATGTTGAAAATGGAAGAGAAATCAATGCGAGGACGAGTTTTTAGTTTATCAACC
                      ____________________________________________________________
consensus             TGGACCATGTTGAAAATGGAAGAGAAATCAATGCGAGGACGAGTTTTTAGTTTATCAACC
 
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JMFF003N17+           TCAGACTGTGAAAGCTCTGACAGCCTATAGGACTTCATTGCAGACCTGATTATCTTACAA
JMFF014G12+           TCAGACTGTGAAAGCTCTGACAGCCTATAGGACTTCATTGCAGACCTGATTATCTTACAA
JMSF017F06+           TCAGACTGTGAAAGCTCTGACAGCCTATAGGACTTCATTGCAGACCTGATTATCTTACAA
                      ____________________________________________________________
consensus             TCAGACTGTGAAAGCTCTGACAGCCTATAGGACTTCATTGCAGACCTGATTATCTTACAA
 
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JMFF003N17+           AATGACCCTGCGCGCAGATGAGGATACTTCCGGCGAGCAGAGTTTCCGCCCAAACTCCGA
JMFF014G12+           AATGACCCTGCGCGCAGATGAGGATACTTCCGGCGAGCAGAGTTTCCGCCCAAACTCCGA
JMSF017F06+           AATGACCCTGCGCGCAGATGAGGATACTTCCGGCGAGCAGAGTTTCCGCCCAAACTCCGA
                      ____________________________________________________________
consensus             AATGACCCTGCGCGCAGATGAGGATACTTCCGGCGAGCAGAGTTTCCGCCCAAACTCCGA
 
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JMFF003N17+           GTCAAGCTAAGACTCCCACTGAATGAAAGAACTCTACAATCCATTCCACTCCTGGTGGTT
JMFF014G12+           GTCAAGCTAAGACTCCCACTGAATGAAAGAACTCTACAATCCATTCCACTCCTGGTGGTT
JMSF017F06+           GTCAAGCTAAGACTCCCACTGAATGAAAGAACTCTACAATCCATTCCACTCCTGGTGGTT
                      ____________________________________________________________
consensus             GTCAAGCTAAGACTCCCACTGAATGAAAGAACTCTACAATCCATTCCACTCCTGGTGGTT
 
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JMFF003N17+           CACTGCCGACAGCCGACTGCAGAGTGCCGGAGACTGGAGGGCTGCTTCGCTGGGACTGGT
JMFF014G12+           CACTGCCGACAGCCGACTGCAGAGTGCCGGAGACTGGAGGGCTGCTTCGCTGGGACTGGT
JMSF017F06+           CACTGCCGACAGCCGACTGCAGAGTGCCGGAGACTGGAGGGCTGCTTCGCTGGGACTGGT
                      ____________________________________________________________
consensus             CACTGCCGACAGCCGACTGCAGAGTGCCGGAGACTGGAGGGCTGCTTCGCTGGGACTGGT
 
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JMFF003N17+           TATCGGAGACCGGAGGGCTGCGTCTCTGCCTCGCTGGGTGCCTAGGTCACGCGAGCCGTC
JMFF014G12+           TATCGGAGACCGGAGGGCTGCGTCTCTGCCTCGCTGGGTGCCTAGGTCACGCGAGCCGTC
JMSF017F06+           TATCGGAGACCGGAGGGCTGCGTCTCTGCCTCGCTGGGTGCCTAGGTCACGCGAGCCGTC
                      ____________________________________________________________
consensus             TATCGGAGACCGGAGGGCTGCGTCTCTGCCTCGCTGGGTGCCTAGGTCACGCGAGCCGTC
 
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JMFF003N17+           GCTGCTCAGTGTTCACTGGGAGTGGGGAGAAGACTCGCTGTCGTCGCTCTCTGC      
JMFF014G12+           GCTGCTCAGTGTTCACTGGGAGTGGGGAGAAGACTCGCTGTCGTCGCTCTCTGC      
JMSF017F06+           GCTGCTCAGTGTTCACTGGGAGTGGGGAGAAGACTCGCTGTCGTCGCTCTCTGCCTGTCT
                      ____________________________________________________________
consensus             GCTGCTCAGTGTTCACTGGGAGTGGGGAGAAGACTCGCTGTCGTCGCTCTCTGCCTGTCT
 
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JMSF017F06+           CACTGGAGTCGCTAATGGCTGCGTAAATTTTATTAGGGATTTAGGAATTAGGAGAATTCG
                      ____________________________________________________________
consensus             CACTGGAGTCGCTAATGGCTGCGTAAATTTTATTAGGGATTTAGGAATTAGGAGAATTCG
 
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JMSF017F06+           GGTTGCCAGTACTAGGATGGCAACGGGGCGGGTGCGGTAATGGGGTGGCTAAAAATGCTC
                      ____________________________________________________________
consensus             GGTTGCCAGTACTAGGATGGCAACGGGGCGGGTGCGGTAATGGGGTGGCTAAAAATGCTC