Contig 006462:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN044G15Sequence615006462 (7)ref|XP_009796892.1|2e-87PREDICTED: 50S ribosomal protein L4, chloroplastic [Nicotiana sylvestris] sp|O8
JMSF015P11Sequence418006462 (7)ref|XP_009796892.1|1e-40PREDICTED: 50S ribosomal protein L4, chloroplastic [Nicotiana sylvestris] sp|O8757006462 (7)ref|XP_006348359.1|5e-78PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Solanum tuberosum]
JMSF017A08Sequence412006462 (7)ref|XP_009796892.1|5e-39PREDICTED: 50S ribosomal protein L4, chloroplastic [Nicotiana sylvestris] sp|O8767006462 (7)ref|XP_006348359.1|7e-74PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Solanum tuberosum]
JMSF029E19Sequence628006462 (7)ref|XP_009602569.1|7e-83PREDICTED: 50S ribosomal protein L4, chloroplastic [Nicotiana tomentosiformis]683006462 (7)ref|XP_006348359.1|2e-50PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF029E19-                                                AGCAAATCTATGAATCAGTTTC
rJMSF015P11-                     GCATTGATCTATCCAGCAATTCTTACAAGCAAATCTATGAATCAGTTTC
rJMSF017A08-                   TAGCATTGATCTATCCAGCAATTCTTACAAGCAAATCTATGAATCAGTTTC
                      ____________________________________________________________
consensus                      TAGCATTGATCTATCCAGCAATTCTTACAAGCAAATCTATGAATCAGTTTC
 
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rJMSF029E19-          -AAGAACTCAAACAGCCAAAAATACACTGAGGGGGTTCAATTAACATGACAAAGCCAAAG
rJMSF015P11-          AAAGAACTCAAACAGCCAAAAATACACTGAGGGGGTTCAATTAACATGACAAAGCCAAAG
rJMSF017A08-          AAAGAACTCAAACAGCCAAAAATACACTGAGGGGGTTCAATTAACATGACAAAGCCAAAG
                      ____________________________________________________________
consensus             AAAGAACTCAAACAGCCAAAAATACACTGAGGGGGTTCAATTAACATGACAAAGCCAAAG
 
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rJMSF029E19-          AATATAAGAGCTAAACAAAGTAAGCTGTAAAAGCAGAAATAGCTTCAATAATATATCATT
rJMSF015P11-          AATATAAGAGCTAAACAAAGTAAGCTGTAAAAGCAGAAATAGCTTCAATAATATATCATT
rJMSF017A08-          AATATAAGAGCTAAACAAAGTAAGCTGTAAAAGCAGAAATAGCTTCAATAATATATCATT
                      ____________________________________________________________
consensus             AATATAAGAGCTAAACAAAGTAAGCTGTAAAAGCAGAAATAGCTTCAATAATATATCATT
 
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rJMSF029E19-          TGGCTTAATTAATGATCTACAAAGATTTCAGGGATAGCCTGACAACTATATTAGCAGCAG
rJMSF015P11-          TGGCTTAATTAATGATCTACAAAGATTTCAGGGATAGCCTGACAACTATATTAGCAGCAA
rJMSF017A08-          TGGCTTAATTAATGATCTACAAAGATTTCAGGGATAGCCTGACAACTATATTAGCAGCAA
                      ____________________________________________________________
consensus             TGGCTTAATTAATGATCTACAAAGATTTCAGGGATAGCCTGACAACTATATTAGCAGCAA
 
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rJMSF029E19-          GCAGATCAATCTGAAGAATTGGCAGTTTCATCTGCCTCAGCTCCTTCTTCTTCTTCTTCA
rJMSF015P11-          GCAGATCAATCTGAAGAATTGGCAGTTTCATCTGCCTCAGCTCCTTCTTCTTCTTCTTCA
rJMSF017A08-          GCAGATCAATCTGAAGAATTGGCAGTTTCATCTGCCTCAGCTCCTTCTTCTTCTTCTTCA
                      ____________________________________________________________
consensus             GCAGATCAATCTGAAGAATTGGCAGTTTCATCTGCCTCAGCTCCTTCTTCTTCTTCTTCA
 
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rJMSF029E19-          TCTTCCTCGTTCTCCAAACCCTCATCGTTCTCCCAGTCGGCATCGTTTCCATACCTCTCA
rJMSF015P11-          TCTTCCTCGTTCTCCAAACCCTCATCGTTCTCCCAGTCGGCATCGTTTCCATACCTCTCA
rJMSF017A08-          TCTTCCTCGTTCTCCAAACCCTCATCGTTCTCCCAGTCGGCATCGTTTCCATACCTCTCA
                      ____________________________________________________________
consensus             TCTTCCTCGTTCTCCAAACCCTCATCGTTCTCCCAGTCGGCATCGTTTCCATACCTCTCA
 
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rJMSF029E19-          TTCAAGAACTCGAGGGCGGATTTCGTAAACACTAACTTCTCAGAATCCAAAATGTCGAAC
rJMSF015P11-          TTCAAGAACTCGAGGGCGGATTTCGTAAACACTAACTTCTCAGAATCCAAAATGTCGAAC
rJMSF017A08-          TTCAAGAACTCGAGGGCGGATTTCGTAAACACTAACTTCTCAGAATCCAAAATGTCGAAC
                      ____________________________________________________________
consensus             TTCAAGAACTCGAGGGCGGATTTCGTAAACACTAACTTCTCAGAATCCAAAATGTCGAAC
 
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rJMSF029E19-          AAATTCAAAGTCCGAGGAGTCAACATCTTCAACTTCCCAAGGTTTCGCCCCGAAAGCATC
rJMSF015P11-          AAATTCAAAGTCCGAGGAGTCAACATCTTCAACTTCCCAAGGTTTCGCCCCGAAAGCATC
rJMSF017A08-          AAATTCAAAGTCCGAGGAGTCAACATCTTCAACTTCCCAAGGTTTCGCCCCGAAAGCATC
                      ____________________________________________________________
consensus             AAATTCAAAGTCCGAGGAGTCAACATCTTCAACTTCCCAAGGTTTCGCCCCGAAAGCATC
 
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rJMSF029E19-          ACATTATCCGACGCCTCCGTCATCAAGAACATGCATTTCTCTTTCGGGTCC-AACCCAGC
rJMSF015P11-          ACATTATCCGACGCCTCCGTCATCAAGAACATGCATTTCTCTTTTGGGTCCAAACCCAGC
rJMSF017A08-          ACATTATCCGACGCCTCCGTCATCAAGAACATGCATTTCTCTTTTGGGTCCAAACCCAGC
JMFN044G15+                                                               AACCCAGC
JMSF029E19+                             GTCATCAAGAACATGCATTTCTCTTTCGGGTCC-AACCCAGC
                      ____________________________________________________________
consensus             ACATTATCCGACGCCTCCGTCATCAAGAACATGCATTTCTCTTTCGGGTCC-AACCCAGC
 
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rJMSF029E19-          CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
rJMSF015P11-          CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
rJMSF017A08-          CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
JMFN044G15+           CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
JMSF029E19+           CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
                      ____________________________________________________________
consensus             CTCTTCATCAGGGCTATGAGTTCCTTAGTCTTAGGTTTTTCGAATTTATCACTAAATTCC
 
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rJMSF029E19-          TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
rJMSF015P11-          TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
rJMSF017A08-          TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
JMFN044G15+           TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
JMSF029E19+           TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
                      ____________________________________________________________
consensus             TCGACGACGATGCAGTTTTCCGCGGCACTGGCAAGGGCGGTGGAAATGGCGAGCCGCTTC
 
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rJMSF029E19-          TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
rJMSF015P11-          TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
rJMSF017A08-          TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
JMFN044G15+           TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
JMSF029E19+           TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
                      ____________________________________________________________
consensus             TCCTTCTTGTTAATCTTAATTGACCAGTCCCGGGGCTTTGGCCCAAACACGACTCCACCT
 
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rJMSF015P11-          CCGGGACGGAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTT            
rJMSF017A08-          CCGGGACGGAGAGGAGTACGG-AAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGT   
JMFN044G15+           CCGGGACGGAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGTGAG
JMSF029E19+           CCGGGACGGAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGTGAG
JMSF017A08+                   GAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGTGAG
JMSF015P11+             GGGACGGAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGTGAG
                      ____________________________________________________________
consensus             CCGGGACGGAGAGGAGTACGGAAAGACCCCATCCGAGCCCGCCCCGTTTTCTTCTGTGAG
 
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JMFN044G15+           TAAGGCTTCTTGCCGCCTCCGCGGACCTCCGCGCGGGTGAGGGTAGAGGCCGTGCCTCGA
JMSF029E19+           TAAGGCTTCTTGCCGCCTCCGCGGACCTCCGCGCGGGTGAGGGTAGAGGCCGTGCCTCGA
JMSF017A08+           TAAGGCTTCTTGCCGCCTCCGCGGACCTCCGCGCGGGTGAGGGTAGAGGCCGTGCCTCGA
JMSF015P11+           TAAGGCTTCTTGCCGCCTCCGCGGACCTCCGCGCGGGTGAGGGTAGAGGCCGTGCCTCGA
                      ____________________________________________________________
consensus             TAAGGCTTCTTGCCGCCTCCGCGGACCTCCGCGCGGGTGAGGGTAGAGGCCGTGCCTCGA
 
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JMFN044G15+           CGCTTATTGCGGAGGTCGGTGACGAGACCGCGGTGGACGACGGCGCGGGCGGTGTAGGGA
JMSF029E19+           CGCTTATTGCGGAGGTCGGTGACGAGACCGCGGTGGACGACGGCGCGGGCGGTGTAGGGA
JMSF017A08+           CGCTTATTGCGGAGGTCGGTGACGAGACCGCGGTGGACGACGGCGCGGGCGGTGTAGGGA
JMSF015P11+           CGCTTATTGCGGAGGTCGGTGACGAGACCGCGGTGGACGACGGCGCGGGCGGTGTAGGGA
                      ____________________________________________________________
consensus             CGCTTATTGCGGAGGTCGGTGACGAGACCGCGGTGGACGACGGCGCGGGCGGTGTAGGGA
 
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JMFN044G15+           GGGGCGGACTTGATGTCAAGGGTGGTGGACCCTACTTGGTCGCCGTCGAAAGAGAGGATT
JMSF029E19+           GGGGCGGACTTGATGTCAAGGGTGGTGGACCCTACTTGGTCGCCGTCGAAAGAGAGGATT
JMSF017A08+           GGGGCGGACTTGATGTCAAGGGTGGTGGACCCTACTTGGTCGCCGTCGAAAGAGAGGATT
JMSF015P11+           GGGGCGGACTTGATGTCAAGGGTGGTGGACCCTACTTGGTCGCCGTCGAAAGAGAGGATT
                      ____________________________________________________________
consensus             GGGGCGGACTTGATGTCAAGGGTGGTGGACCCTACTTGGTCGCCGTCGAAAGAGAGGATT
 
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JMFN044G15+           GGGAGTGTGGCCTGCTCTGCACGGACGGCGGCAGAGCGGTAAACTCTGGGCTTTGGGGAT
JMSF029E19+           GGGAGTGTGGCCTGCTCTGCACGGACGGCGGCAGAGCGGTAAACTCTGGGCTTTGGGGAT
JMSF017A08+           GGGAGTGTGGCCTGCTCTGCACGGACGGCGGCAGAGCGGTAAACTCTGGGCTTTGGGGAT
JMSF015P11+           GGGAGTGTGGCCTGCTCTGCACGGACGGCGGCAGAGCGGTAAACTCTGGGCTTTGGGGAT
                      ____________________________________________________________
consensus             GGGAGTGTGGCCTGCTCTGCACGGACGGCGGCAGAGCGGTAAACTCTGGGCTTTGGGGAT
 
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JMFN044G15+           TTCAAGAACAGGAGCTTAGAAGGAGCTTTGCGGAGAGGAGAGGAGAGAAATGTAGAAGAC
JMSF029E19+           TTCAAGAACAGGAGCTTAGAAGGAGCTTTGCGGAGAGGAGAGGAGAGAAATGTAGAAGAC
JMSF017A08+           TTCAAGAACAGGAGCTTAGAAGGAGCTTTGCGGAGAGGAGAGGAGAGAAATGTAGAAGAC
JMSF015P11+           TTCAAGAACAGGAGCTTAGAAGGAGCTTTGCGGAGAGGAGAGGAGAGAAATGTAGAAGAC
                      ____________________________________________________________
consensus             TTCAAGAACAGGAGCTTAGAAGGAGCTTTGCGGAGAGGAGAGGAGAGAAATGTAGAAGAC
 
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JMFN044G15+           GAGAAGAATGAGAAAGAAGGTGCAGAAGAAGTCG                          
JMSF029E19+           GAGAAGAATGAGAAAGAAGGTGCAGAAGAAGTCGCCATTGTTTCTC              
JMSF017A08+           GAGAAGAATGAGAAAGAAGGTGCAGAAGAAGTCGCCATTGTTTCTCAGAATTGAAGCTTC
JMSF015P11+           GAGAAGAATGAGAAAGAAGGTGCAGAAGAAGTCGCCATTGTTTCTCAGAATTGAAGCTTC
                      ____________________________________________________________
consensus             GAGAAGAATGAGAAAGAAGGTGCAGAAGAAGTCGCCATTGTTTCTCAGAATTGAAGCTTC