Contig 006456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025B23Sequence573006456 (2)ref|XP_011002698.1|1e-31PREDICTED: nuclear pore complex protein NUP50B [Populus euphratica]759013723 (3)dbj|BAO49701.1|6e-74nuclear pore complex protein Nup50a [Nicotiana benthamiana]
JMSF015A09Sequence230006456 (2)ref|XP_002299634.1|2e-10Ran-binding protein 1 domain-containing [Populus trichocarpa] gb|EEE84439.1| Ran735013723 (3)dbj|BAO49701.1|5e-75nuclear pore complex protein Nup50a [Nicotiana benthamiana]

Alignment

This contig is upended


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JMFF025B23+                                    GATTCTTTATCATTCTCACTACTTTTCCCTTGTGC
                      ____________________________________________________________
consensus                                      GATTCTTTATCATTCTCACTACTTTTCCCTTGTGC
 
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JMFF025B23+           TTCATTGTTCACATCAGCTTTTGCCTCCTCAGTTTCCTCCTTCACATCAGCTTTTGTCTC
                      ____________________________________________________________
consensus             TTCATTGTTCACATCAGCTTTTGCCTCCTCAGTTTCCTCCTTCACATCAGCTTTTGTCTC
 
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JMFF025B23+           ATCAGTTTCCTTGTTCACGTCAGCTTTTGCTTCCTCGTTCGCATCCTGTTTTTCTTCCAC
                      ____________________________________________________________
consensus             ATCAGTTTCCTTGTTCACGTCAGCTTTTGCTTCCTCGTTCGCATCCTGTTTTTCTTCCAC
 
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JMFF025B23+           CTTGTCTGATTTTGCATCTGTGGCCTCCACAGGAGCAGTAGCAGGTGAAACCAAGCGTAT
                      ____________________________________________________________
consensus             CTTGTCTGATTTTGCATCTGTGGCCTCCACAGGAGCAGTAGCAGGTGAAACCAAGCGTAT
 
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JMFF025B23+           CCCAGCAAAAGGGTTAGAGGAAGGAGCAGAAGGGGTTGATGATGTCTGTTGGCGCCGAAC
                      ____________________________________________________________
consensus             CCCAGCAAAAGGGTTAGAGGAAGGAGCAGAAGGGGTTGATGATGTCTGTTGGCGCCGAAC
 
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JMFF025B23+           TTTCACAATTCTTCTACTTGCCATGACCTCATCACTTGCCTTCTGGAAAGTTCCAGTCTC
                      ____________________________________________________________
consensus             TTTCACAATTCTTCTACTTGCCATGACCTCATCACTTGCCTTCTGGAAAGTTCCAGTCTC
 
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JMFF025B23+           TTGCTCAGATGTCTCATCATCATCATCTAGACCAGGGTTATCTCGTGATATCTCCCTCCC
JMSF015A09+                     GTCTCATCATCATCATCTAGACCAGGGTTATCTCGTGATATCTCCCTCCC
                      ____________________________________________________________
consensus             TTGCTCAGATGTCTCATCATCATCATCTAGACCAGGGTTATCTCGTGATATCTCCCTCCC
 
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JMFF025B23+           GGCAGCCCTCTTTTTTGAGGGTGGAAGAGCATTTTCAGCATCCCCCATTTCAATGTAGAA
JMSF015A09+           GGCAGCCCTCTTTTTTGAGGGTGGAAGAGCATTTTCAGCATCCCCCATTTCAATGTAGAA
                      ____________________________________________________________
consensus             GGCAGCCCTCTTTTTTGAGGGTGGAAGAGCATTTTCAGCATCCCCCATTTCAATGTAGAA
 
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JMFF025B23+           ACACGCGAAACGTTTTCACAAAAACAAAGAACTCAACAGCTTGGGAAATTTGAGCTTATT
JMSF015A09+           ACACGCGAAACGTTTTCACAAAAACAAAGAACTCAACAGCTTGGGAAATTTGAGCTTATT
                      ____________________________________________________________
consensus             ACACGCGAAACGTTTTCACAAAAACAAAGAACTCAACAGCTTGGGAAATTTGAGCTTATT
 
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JMFF025B23+           GGAGGTGATGACGAAGAAGAAGAAGCAGTTCATTTGATTAGGGAATATATAAAACCCT  
JMSF015A09+           GGAGGTGATGACGAAGAAGAAGAAGCAGTTCATTTGATTAGGGAATATATAAAACCCTCA
                      ____________________________________________________________
consensus             GGAGGTGATGACGAAGAAGAAGAAGCAGTTCATTTGATTAGGGAATATATAAAACCCTCA