Contig 006449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014G10Sequence557006449 (3)ref|XP_009624585.1|6e-26PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [773004222 (3)gb|AHF22108.1|1e-87bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase
JMSF050F15Sequence698006449 (3)ref|XP_009624585.1|4e-69PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [741004222 (3)dbj|BAA08113.1|2e-113GTP cyclohydrolase II [Arabidopsis thaliana]
JMSF050O01Sequence586006449 (3)ref|XP_009624585.1|2e-43PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [771004222 (3)gb|AHF22108.1|3e-84bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase

Alignment

This contig is upended


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JMSF050F15+                                             CCATCATACTCACACAGACAATTCCA
                      ____________________________________________________________
consensus                                               CCATCATACTCACACAGACAATTCCA
 
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JMSF050F15+           GTCCCGTGCCTCACAATAAAGGCCATTGCTTCTGGCGTAACTTTCGATGCTGCCATTATT
                      ____________________________________________________________
consensus             GTCCCGTGCCTCACAATAAAGGCCATTGCTTCTGGCGTAACTTTCGATGCTGCCATTATT
 
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JMSF050O01+                                 CCTCGTCATCCACAACCAGTACCATCCTCCCTTGGCGA
JMSF050F15+           AGATCTCCTTCGTTTTCTCGGTCCTCGTCATCCACAACCAGTACCATCTTCCCTTGGCGA
                      ____________________________________________________________
consensus             AGATCTCCTTCGTTTTCTCGGTCCTCGTCATCCACAACCAGTACCATCTTCCCTTGGCGA
 
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JMSF050O01+           ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
JMSF050F15+           ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
JMSF014G10+                                                      GCTCGTCCAAATCGAAT
                      ____________________________________________________________
consensus             ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
 
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JMSF050O01+           TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
JMSF050F15+           TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
JMSF014G10+           TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
                      ____________________________________________________________
consensus             TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
 
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JMSF050O01+           AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
JMSF050F15+           AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
JMSF014G10+           AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
                      ____________________________________________________________
consensus             AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
 
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JMSF050O01+           TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
JMSF050F15+           TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
JMSF014G10+           TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
                      ____________________________________________________________
consensus             TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
 
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JMSF050O01+           CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
JMSF050F15+           CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
JMSF014G10+           CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
                      ____________________________________________________________
consensus             CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
 
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JMSF050O01+           TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
JMSF050F15+           TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
JMSF014G10+           TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
                      ____________________________________________________________
consensus             TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
 
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JMSF050O01+           GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
JMSF050F15+           GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
JMSF014G10+           GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
                      ____________________________________________________________
consensus             GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
 
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JMSF050O01+           CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
JMSF050F15+           CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
JMSF014G10+           CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
                      ____________________________________________________________
consensus             CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
 
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JMSF050O01+           GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
JMSF050F15+           GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
JMSF014G10+           GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
                      ____________________________________________________________
consensus             GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
 
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JMSF050O01+           GATCTTC                                                     
JMSF050F15+           GATCTTC                                                     
JMSF014G10+           GATCTTCAGGTAGAAAGCTCTGGCATACGGGTAGGTGGAGGTTCGCTGTTGTCTACTGTC
                      ____________________________________________________________
consensus             GATCTTCAGGTAGAAAGCTCTGGCATACGGGTAGGTGGAGGTTCGCTGTTGTCTACTGTC