clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF048M09 | Sequence | 625 | 006447 (4) | ref|XP_009598882.1| | 2e-36 | PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N | 575 | 004148 (4) | gb|ACU19049.1| | 1e-57 | unknown [Glycine max] |
JMSF010A05 | Sequence | 262 | 006447 (4) | 796 | 004148 (4) | ref|XP_009598882.1| | 2e-144 | PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N | |||
JMSF014A03 | Sequence | 293 | 006447 (4) | 778 | 004148 (4) | ref|XP_009598882.1| | 3e-130 | PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N | |||
JMSF049P23 | Sequence | 688 | 006447 (4) | ref|XP_009598882.1| | 3e-34 | PREDICTED: putative peptide chain release factor 1, mitochondrial isoform X2 [N | 664 | 004148 (4) | gb|KDO53115.1| | 1e-91 | hypothetical protein CISIN_1g0170092mg, partial [Citrus sinensis] gb|KDO53116.1| |
This contig is upended
. : . : . : . : . : . :
JMFF048M09+ TCATTCCT
____________________________________________________________
consensus TCATTCCT
. : . : . : . : . : . :
JMFF048M09+ TAATTATACCAGCAGCTTCTTCAAGAAGCCCTGTATCAATGGAGTCCATCTCCTCAGTAA
JMSF049P23+ TATACCAGCAGCTTCTTCAAGAAGCCCTGTATCAATGGAGTCCATCTCCTCAGTAA
____________________________________________________________
consensus TAATTATACCAGCAGCTTCTTCAAGAAGCCCTGTATCAATGGAGTCCATCTCCTCAGTAA
. : . : . : . : . : . :
JMFF048M09+ GGTTAATTATTGTTTCTGCATCACCAACCTGTGTCATGAAGTCATTGAGAAGCTTTAATT
JMSF049P23+ GGTTAATTATTGTTTCTGCATCACCAACCTGTGTCATGAAGTCATTGAGAAGCTTTAATT
____________________________________________________________
consensus GGTTAATTATTGTTTCTGCATCACCAACCTGTGTCATGAAGTCATTGAGAAGCTTTAATT
. : . : . : . : . : . :
JMFF048M09+ TTTCTTTGGCATCAGTCAAACCCTGAAGTGTCTGTTGAGCTCTAGCACGATCGTCCCAGA
JMSF049P23+ TTTCTTTGGCATCAGTCAAACCCTGAAGTGTCTGTTGAGCTCTAGCACGATCGTCCCAGA
____________________________________________________________
consensus TTTCTTTGGCATCAGTCAAACCCTGAAGTGTCTGTTGAGCTCTAGCACGATCGTCCCAGA
. : . : . : . : . : . :
JMFF048M09+ GAGCGGTATCTGCTGCTGCTGCTTCTAGAGCTGCAATGTCTTCTTCCAGTTGCTGCAGCC
JMSF049P23+ GAGCGGTATCTGCTGCTGCTGCTTCTAGAGCTGCAATGTCTTCTTCCAGTTGCTGCAGCC
____________________________________________________________
consensus GAGCGGTATCTGCTGCTGCTGCTTCTAGAGCTGCAATGTCTTCTTCCAGTTGCTGCAGCC
. : . : . : . : . : . :
JMFF048M09+ CCGCAGCAGCCCTAATTTCTTCGACTCGTTGTGAGACAACCTCGACATCCTTTCTCAAAA
JMSF049P23+ CCGCAGCAGCCCTAATTTCTTCGACTCGTTGTGAGACAACCTCGACATCCTTTCTCAAAA
____________________________________________________________
consensus CCGCAGCAGCCCTAATTTCTTCGACTCGTTGTGAGACAACCTCGACATCCTTTCTCAAAA
. : . : . : . : . : . :
JMFF048M09+ TATAGAAATCTTGCATAGCCCATTCCCTTGTCCCTGTTTCACTGCTGCTGACTGCATCCA
JMSF049P23+ TATAGAAATCTTGCATAGCCCATTCCCTTGTCCCTGTTTCACTGCTGCTGACTGCATCCA
____________________________________________________________
consensus TATAGAAATCTTGCATAGCCCATTCCCTTGTCCCTGTTTCACTGCTGCTGACTGCATCCA
. : . : . : . : . : . :
JMFF048M09+ CCTCAGGTGTCGCACGAGCAGTTGGAGAAGAAACATTGGAATAGAGCGCGGAACTGGAAG
JMSF010A05+ GAATAGAGCGCGGAACTGGAAG
JMSF049P23+ CCTCAGGTGTCGCACGAGCAGTTGGAGAAGAAACATTGGAATAGAGCGCGGAACTGGAAG
____________________________________________________________
consensus CCTCAGGTGTCGCACGAGCAGTTGGAGAAGAAACATTGGAATAGAGCGCGGAACTGGAAG
. : . : . : . : . : . :
JMFF048M09+ AACAACCGGAATCGTTGCTGGGACCAATGAATAGTGGTTTCTGTGAATTGAAGTGAAATT
JMSF010A05+ AACAACCGGAATCGTTGCTGGGACCAATGAATAGTGGTTTCTGTGAATTGAAGTGAAATT
JMSF049P23+ AACAACCGGAATCGTTGCTGGGACCAATGAATAGTGGTTTCTGTGAATTGAAGTGAAATT
JMSF014A03+ GGAATCGTTGCTGGGACCAATGAATAGTGGTTTCTGTGAATTGAAGTGAAATT
____________________________________________________________
consensus AACAACCGGAATCGTTGCTGGGACCAATGAATAGTGGTTTCTGTGAATTGAAGTGAAATT
. : . : . : . : . : . :
JMFF048M09+ GGGAATGATGCAATTGTCTAACGCTGTTGGAAGATGTTTTTACGTTTGTAGTTTTAGCGA
JMSF010A05+ GGGAATGATGCAATTGTATAACGCTGTTGGAAGATGTTTTTACGTTTGTAGTTTTAGCGA
JMSF049P23+ GGGAATGATGCAATTGTATAACGCTGTTGGAAGATGTTTTTACGTTTGTAGTTTTAGCGA
JMSF014A03+ GGGAATGATGCAATTGTATAACGCTGTTGGAAGATGTTTTTACGTTTGTAGTTTTAGCGA
____________________________________________________________
consensus GGGAATGATGCAATTGTATAACGCTGTTGGAAGATGTTTTTACGTTTGTAGTTTTAGCGA
. : . : . : . : . : . :
JMFF048M09+ AAGGGCCTCTTCTGAAGTCATAGACCGGCGGCCGCACATGCGGCGGTGCTAAACTGTGCA
JMSF010A05+ AAGGGCCTCTTCTGAAGTCATAGACCGGCGGCCGCACATGCGGCGGTGCTAAACTGTGCA
JMSF049P23+ AAGGGCCTCTTCTGAAGTCATAGACCGGCGGCCGCACATGCGGCGGTGCTAAACTGTGCA
JMSF014A03+ AAGGGCCTCTTCTGAAGTCATAGACCGGCGGCCGCACATGCGGCGGTGCTAAACTGTGCA
____________________________________________________________
consensus AAGGGCCTCTTCTGAAGTCATAGACCGGCGGCCGCACATGCGGCGGTGCTAAACTGTGCA
. : . : . : . : . : . :
JMFF048M09+ CCACCATACTATCCATC
JMSF010A05+ CCACCATACTATCCATCACCGGCGGAAGCTCTCGGCAAGGAGATTAGTATATGCAGACC
JMSF049P23+ CCACCATACTATCCATCACCGGCGGAAGCTCTCGGCAAGGAGATTAGTATATGCAGACCA
JMSF014A03+ CCACCATACTATCCATCACCGGCGGAAGCTCTCGGCAAGGAGATTAGTATATGCAGACCA
____________________________________________________________
consensus CCACCATACTATCCATCACCGGCGGAAGCTCTCGGCAAGGAGATTAGTATATGCAGACCA
. : . : . : . : . : . :
JMSF049P23+ CACATAGACGCTACTCGCTAGGAGTGAAAA
JMSF014A03+ CACATAGACGCTACTCGCTAGGAGTGAAAATGGATAACAATCCACCTTTTTTTTTACTTC
____________________________________________________________
consensus CACATAGACGCTACTCGCTAGGAGTGAAAATGGATAACAATCCACCTTTTTTTTTACTTC