Contig 006445:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013M18Sequence472006445 (2)ref|XP_009780558.1|2e-36PREDICTED: uncharacterized protein LOC104229598 isoform X2 [Nicotiana sylvestri726011282 (2)gb|KDO80850.1|3e-74hypothetical protein CISIN_1g011723mg [Citrus sinensis]
JMSF052N06Sequence659006445 (2)ref|XP_009616109.1|2e-82PREDICTED: uncharacterized protein LOC104108712 isoform X3 [Nicotiana tomentosi933011282 (2)gb|KCW58228.1|9e-136hypothetical protein EUGRSUZ_H00930 [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF052N06+                                                  TTCAGAATCTACAGTAACCCG
                      ____________________________________________________________
consensus                                                    TTCAGAATCTACAGTAACCCG
 
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JMSF052N06+           GCGTTGAGGAAACAGCTTGCATATCTGCTTAATAACAACAGACTGTTTATGAAGGAGTTC
                      ____________________________________________________________
consensus             GCGTTGAGGAAACAGCTTGCATATCTGCTTAATAACAACAGACTGTTTATGAAGGAGTTC
 
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JMSF052N06+           AGAGGTGATGGCCATATGACCAAGATTTTGAGTGCAGATAAGATTAGGAAAGAACTTCTC
                      ____________________________________________________________
consensus             AGAGGTGATGGCCATATGACCAAGATTTTGAGTGCAGATAAGATTAGGAAAGAACTTCTC
 
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JMSF052N06+           AAGTTGTTCTGCACGATTCTTTTCCAGCACGCTCATGGCTGATTCAACCAAATTGTACTT
                      ____________________________________________________________
consensus             AAGTTGTTCTGCACGATTCTTTTCCAGCACGCTCATGGCTGATTCAACCAAATTGTACTT
 
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JMSF052N06+           CTCTTTTAGATCATTAGACAACTTGTCAATATTAGTCTTCCCTTCCAAAAGTTGTTCTCT
JMSF013M18+                   GATCATTAGACAACTNGTCAATATTAGTCTTCCCTTCCAAAAGTTGTTCTCT
                      ____________________________________________________________
consensus             CTCTTTTAGATCATTAGACAACTTGTCAATATTAGTCTTCCCTTCCAAAAGTTGTTCTCT
 
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JMSF052N06+           ACGTTGTCTGAGATCCTCCCTTAATCTTGCAAGCTTCTCATTTTGGAGCACCCGCCAACT
JMSF013M18+           ACGTTGTCTGAGATCCTCCCTTAATCTTGCAAGCTTCTCATTTTGGAGCACCCGCCAACT
                      ____________________________________________________________
consensus             ACGTTGTCTGAGATCCTCCCTTAATCTTGCAAGCTTCTCATTTTGGAGCACCCGCCAACT
 
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JMSF052N06+           CAGTTGATCATCAGCCTTGCCCTTAGCAACAAGCACTTCACTCAATCTTGCATATAATGC
JMSF013M18+           CAGTTGATCATCAGCCTTGCCCTTAGCAACAAGCACTTCACTCAATCTTGCATATAATGC
                      ____________________________________________________________
consensus             CAGTTGATCATCAGCCTTGCCCTTAGCAACAAGCACTTCACTCAATCTTGCATATAATGC
 
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JMSF052N06+           ATCCCTCCGACTCTTCAACGATTTCAAAGTCGTACCATACTCGTTCAATCTGTAATTAAC
JMSF013M18+           ATCCCTCCGACTCTTCAACGATTTCAAAGTCGTACCATACTCGTTCAATCTGTAATTAAC
                      ____________________________________________________________
consensus             ATCCCTCCGACTCTTCAACGATTTCAAAGTCGTACCATACTCGTTCAATCTGTAATTAAC
 
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JMSF052N06+           ACAGACAGGGCAAATAGAAGGGAGATTTGGGTTCTCACATATTCCACAGACATTTGCTTT
JMSF013M18+           ACAGACAGGGCAAATAGAAGGGAGATTTGGGTTCTCACATATTCCACAGACATTTGCTTT
                      ____________________________________________________________
consensus             ACAGACAGGGCAAATAGAAGGGAGATTTGGGTTCTCACATATTCCACAGACATTTGCTTT
 
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JMSF052N06+           CCTCGTCATCATCTGAACATTCATTCACTCACACCTATGGTTTTCTTCCTCATCCGTGTG
JMSF013M18+           CCTCGTCATCATCTGAACATTCATTCACTCACACCTATGGTTTTCTTCCTCATCCGTGTG
                      ____________________________________________________________
consensus             CCTCGTCATCATCTGAACATTCATTCACTCACACCTATGGTTTTCTTCCTCATCCGTGTG
 
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JMSF052N06+           AATGTAATTGGGAATCTATGGTCGCTTTTAAGGCGGCGAGTTTGTAGTGCCTCCCGGTGA
JMSF013M18+           AATGTAATTGGGAATCTATGGTCGCTTTTAAGGCGGCGAGTTTGTAGTGCCTCCCGGTGA
                      ____________________________________________________________
consensus             AATGTAATTGGGAATCTATGGTCGCTTTTAAGGCGGCGAGTTTGTAGTGCCTCCCGGTGA
 
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JMSF052N06+           CCGGAGCTCCGGCGGCGCTATGTCTTAGAGTTTCCTTG                      
JMSF013M18+           CCGGAGCTCCGGCGGCGCTATGTCTTAGAGTTTCCTTGGCTTTGCTTTTGCAGTCTTGTC
                      ____________________________________________________________
consensus             CCGGAGCTCCGGCGGCGCTATGTCTTAGAGTTTCCTTGGCTTTGCTTTTGCAGTCTTGTC